PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00161.1.g00620.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 438aa    MW: 47946.7 Da    PI: 11.2748
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00161.1.g00620.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.93.1e-10255298147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   r  WT++E++++ +a +++G + WktI + +  ++t+ q++s+ qk+
  Zmw_sc00161.1.g00620.1.am.mk 255 REEWTADEHDRF-HAMRMFGHD-WKTIGQFVA-TKTATQIRSHAQKH 298
                                   689********9.899****99.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.4E-11249304IPR009057Homeodomain-like
PROSITE profilePS5129412.207250303IPR017930Myb domain
TIGRFAMsTIGR015572.4E-10254301IPR006447Myb domain, plants
SMARTSM007173.8E-5254301IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-4255298IPR009057Homeodomain-like
PfamPF002491.4E-7255298IPR001005SANT/Myb domain
CDDcd001677.01E-6257299No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MSRMRASPQR VPASGQKPKL TSWSRRPWWS HCRRFAIASG KKLLYSDLTR AGPGDEGMGE  60
EAVAHLGAGC GVREGAVDGG ERCSAPPLQL LLSRELAFSP ARAVSYKYPR GSRTRSLVRV  120
SRCASLSGRP APSSCATGGF SGWARLRAQL LCVGRTCRQL LYRMRRTRFR LAAPRRRTAY  180
SSTPQLSTDN TAQGTSSRLC SAPSSPLRPC MSLTHDIARK VTTSARNLAG TPPAGSGKKK  240
EKKKPRKPYT ISRPREEWTA DEHDRFHAMR MFGHDWKTIG QFVATKTATQ IRSHAQKHFL  300
KVHKLAGGLA APLPPLPRPR RATGAVLPRP TAASSATSVN ALQSVMNWAP RSAACWSDRD  360
DSTFTATPDR SEQEAWVADS LSQDDGTVEL PLAPDDRRFA EVYRFVGDAF GSGAPCPVEV  420
QLRRLRGMDP VVAETVLC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1238246KKEKKKPRK
2240247EKKKPRKP
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36423170