PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00169.1.g00170.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family RAV
Protein Properties Length: 730aa    MW: 79261.5 Da    PI: 10.0446
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00169.1.g00170.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.95.8e-19108155455
                           AP2   4 kGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   +GVr ++ +gr++AeIrd +     r +r++lg+f+t+e Aa+a++aa+++l+g
  Zmw_sc00169.1.g00170.1.am.mk 108 RGVRKRP-WGRYAAEIRDpV-----RkARVWLGTFDTPEAAARAYDAAARRLRG 155
                                   9******.**********44.....55**************************9 PP
2B334.34.1e-116597281792
                                   E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                            B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                                    lp  f++++  k  ++  +tl de  ++++  +     +++  l++GW++F+ +++L +gD vvF+l ++++f+ 
  Zmw_sc00169.1.g00170.1.am.mk 659 GLPVGFCRKYLPK--RDERITLVDEADEEFDTLYL--APKRG--LSAGWRGFAVDHELVDGDCVVFELLEQTKFKV 728
                                   599*******433..4557***************4..44444..9**********************987777744 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.7E-29106169IPR001471AP2/ERF domain
PROSITE profilePS5103223.354106163IPR001471AP2/ERF domain
PfamPF008471.4E-12107155IPR001471AP2/ERF domain
PRINTSPR003671.7E-8107118IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-20107164IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.7E-28108163IPR001471AP2/ERF domain
CDDcd000182.16E-14108165No hitNo description
PRINTSPR003671.7E-8129145IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.104.3E-15605621IPR015300DNA-binding pseudobarrel domain
CDDcd100177.91E-18606730No hitNo description
SMARTSM010190.0024642729IPR003340B3 DNA binding domain
SuperFamilySSF1019363.53E-14658729IPR015300DNA-binding pseudobarrel domain
PfamPF023621.4E-8659728IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.3E-15659729IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.024660730IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 730 aa     Download sequence    Send to blast
LPLLVGATSH WWELRGTKKI GAALLAGTPG PNTWHVPPPD PPGLAAPSGR HPPHSILNPV  60
AAATTPTRAC RGTGTTSMAP PRSSTSLPSG SSSSSTGLEP KEQPLRLRGV RKRPWGRYAA  120
EIRDPVRKAR VWLGTFDTPE AAARAYDAAA RRLRGPGAAT NYPVADAVPS EGSSSSSSCQ  180
DLDSRPSVAV EATAPPSLDL SLGLPATMAA GHPCLFVDQT ETTVPDVPAL IQFLPLKSEE  240
EAGESVWSSS PGLGDAAPTV GVGLDLSLSW PAATAMFGCT GSPTELARGY RRGYCRSSPA  300
APLASRVSSS VKICIHSRRS PHPFLLSKVS AGAEFKFESV AVRLPPRCTP CMHLSGPTKP  360
QRDGQGRRFM NRVHKPKTPT PSFSLAVRPI QLLCYAFCSP SKPAHPRNRK RWDSERGRSM  420
ADAASYEEQR RRLIEANKRK LEELQLHHLS AAVRDAASGM LSPVGPASLY LPLFLLLQRS  480
FISASAVGLL SSSDLGLVRQ AKKRKLRVPR HAAGEEAEPL RRSGRVASIP EKPNYRDVRA  540
CVPICVFMNR STCAQVVPDF ERRTRRSSGR GRRSDLDNRV YATEEERTYA VTKAEEVAQG  600
LGSGFPSFVK PMTQSHVTGG FWLVKSWRLL PITSCCRFPL SFPSVEVDIS FGGLMELQGL  660
PVGFCRKYLP KRDERITLVD EADEEFDTLY LAPKRGLSAG WRGFAVDHEL VDGDCVVFEL  720
LEQTKFKVTF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-171061631472Ethylene-responsive transcription factor ERF096
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP175638103