PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00172.1.g00160.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

SRS

Protein Properties

Length: 255aa MW: 25942.6 Da PI: 6.8338

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00172.1.g00160.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	31.2	6.8e-10	96	117	4	25
DUF702 4 gtasCqdCGnqakkdCaheRCR 25 g++sCqdCGnqakkdCah+RCR Zmw_sc00172.1.g00160.1.sm.mkhc 96 GGVSCQDCGNQAKKDCAHQRCR 117 6789*****************9 PP
2	DUF702	76.3	8.9e-24	119	175	96	152
DUF702 96 skkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGl 152 +++ + ++++P+evsse vfrcvr++ vd++++e+aYqt+vsigGhvfkGiL+d G+ Zmw_sc00172.1.g00160.1.sm.mkhc 119 QQMVTVAERFPREVSSETVFRCVRLGPVDQADAEVAYQTSVSIGGHVFKGILQDVGP 175 566778899***********************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.4E-6	97	117	IPR007818	Protein of unknown function DUF702
Pfam	PF05142	1.4E-20	124	175	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01624	6.3E-20	127	175	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MAGFPLGGGG HHSRDEPAPS VPQVHPSDAA SFLYAARGGG GLQLWQQHEH QHPFYASNVI 60 RFSSDDSPGA APLLTGAAAS SSSSRGARGS GGAVGGGVSC QDCGNQAKKD CAHQRCRDQQ 120 MVTVAERFPR EVSSETVFRC VRLGPVDQAD AEVAYQTSVS IGGHVFKGIL QDVGPTCLAS 180 VGGSGSGPAI EYHHFRHAGD GSPPSTTPAG EAGGGGGVAG NIIVSSAVVM DPYPTPGPYG 240 AFPAGMSFFH GHPRP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025803795.1	8e-58	protein SHI RELATED SEQUENCE 1-like
TrEMBL	A0A0A9DX08	4e-59	A0A0A9DX08_ARUDO; Uncharacterized protein
STRING	Pavir.J34076.1.p	6e-62	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1354	35	124