PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00174.1.g00270.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Trihelix

Protein Properties

Length: 362aa MW: 41548.1 Da PI: 6.6416

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00174.1.g00270.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	84.2	1.6e-26	67	163	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 +Wt+++v++Li+a+++++e+++++ +kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ + Zmw_sc00174.1.g00270.1.sm.mkhc 67 KWTDSMVKLLITAVSYTGEDYGADLgggrrnfsimQKKGKWKAISKVMDERGCHVSPQQCEDKFNDLNKRYKRLTDILG 145 7*******************9744455677788**************************************** PP trihelix 70 kr.tsessstcpyfdqle 86 ++ +++++ + +++d+++ Zmw_sc00174.1.g00270.1.sm.mkhc 146 RGtACNVVANPALLDSMN 163 5599999999999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	7.0E-21	65	189	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MSANRVSEAD DFPGFQFKEH GQTDNNQHHS HHSKNSMSDD EEHELTEDAN ENPSGKGKKS 60 SAWHRMKWTD SMVKLLITAV SYTGEDYGAD LGGGRRNFSI MQKKGKWKAI SKVMDERGCH 120 VSPQQCEDKF NDLNKRYKRL TDILGRGTAC NVVANPALLD SMNHLTDKMK EDAKKIMSSK 180 HLFYEEMCSY HNNNRANLPE DPALQHSLQL ALRCKEDHDS RRDVLGDGDE DDQSADSDYY 240 EDDEEHHAVH TNTREPSMLK RMRHSDMALV NSSPHEGSAR SDPYGVITVN INKNCPDGSN 300 LASQSLEIQK RRLQIDAKEL ELTKQRLKWE RFKKKKDREL ERMTLENEHM MIENRRICSA 360 SG

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MSANRVSEAD DFPGFQFKEH GQTDNNQHHS HHSKNSMSDD EEHELTEDAN ENPSGKGKKS  60
SAWHRMKWTD SMVKLLITAV SYTGEDYGAD LGGGRRNFSI MQKKGKWKAI SKVMDERGCH  120
VSPQQCEDKF NDLNKRYKRL TDILGRGTAC NVVANPALLD SMNHLTDKMK EDAKKIMSSK  180
HLFYEEMCSY HNNNRANLPE DPALQHSLQL ALRCKEDHDS RRDVLGDGDE DDQSADSDYY  240
EDDEEHHAVH TNTREPSMLK RMRHSDMALV NSSPHEGSAR SDPYGVITVN INKNCPDGSN  300
LASQSLEIQK RRLQIDAKEL ELTKQRLKWE RFKKKKDREL ERMTLENEHM MIENRRICSA  360
SG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	329	335	ERFKKKK
2	330	336	RFKKKKD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001143969.2	0.0	uncharacterized protein LOC100276786
Refseq	XP_020403187.1	0.0	uncharacterized protein LOC100276786 isoform X1
TrEMBL	A0A0A9LZQ4	0.0	A0A0A9LZQ4_ARUDO; Uncharacterized protein
STRING	Sb05g003890.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2920	38	86