PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00175.1.g00060.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 609aa MW: 66642.3 Da PI: 8.8739

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00175.1.g00060.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.8	9.7e-14	358	403	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h + Er+RR+++N++f+ L+++lP+ K +K +iL +A eYI+sL+ Zmw_sc00175.1.g00060.1.am.mk 358 HMISERKRREKLNDSFQALKTVLPPG-----SKKDKTSILIRAREYIRSLE 403 8899******************95.....4999************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.945	353	402	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.48E-13	355	403	No hit	No description
SuperFamily	SSF47459	9.81E-16	356	420	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.7E-17	357	420	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.2E-11	358	403	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.1E-12	359	408	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 609 aa Download sequence Send to blast
MGARNPLGSD GKMLLLDGDV RPPVHLGIRY ECALEGSGNF LRLEQGTATG LVVATPIFCP 60 PRISIDASSG VNRPDTGRRV ALVGWLQRGI DPRHVGDMNW WCPVRWIRVF LSLQQRWIDR 120 SIAMDSSWFH GYATANAAGN NGFMCGYAAS CTPAELQHEE EEEMLISSQI QHHLNQISRH 180 MNMDDEVVYD GVLDIQEHPT MVDDLLDPNH ATSFPSSSSS SSLSLRSGSF SCSPDSSAQV 240 FGAPAPAASG HYPEVSSHVP LPPAAPYTNV HVSTAPLAAT PPAAGKQASA FKSYAQHLGP 300 RRQPTKPGAC GQKMFKTAMS VLSRMHMAAS ARYNQQYYYQ QASAEAVATP PSVNQLQHMI 360 SERKRREKLN DSFQALKTVL PPGSKKDKTS ILIRAREYIR SLESKASELE EKNKELESRL 420 TGHRGSQAGA DDADADKKVQ IEITRAAKEC WAVEPRDLCT LKIVVRSRCN MTDVVLRTLQ 480 CLKDQAGDDV NLVSMNTSGS SAGPPQTSSS PRAVLTMQIK SSRGAKWEEQ PVKDAVAKVV 540 ADAALTPPSA AVDETAPRRR QQLLADKDRR PARPCLTPDD TATSHSAGVV RRGRRRWGRV 600 RFHKRDVDG

Sequence ? help Back to Top

Protein Sequence Length: 609 aa Download sequence Send to blast

MGARNPLGSD GKMLLLDGDV RPPVHLGIRY ECALEGSGNF LRLEQGTATG LVVATPIFCP  60
PRISIDASSG VNRPDTGRRV ALVGWLQRGI DPRHVGDMNW WCPVRWIRVF LSLQQRWIDR  120
SIAMDSSWFH GYATANAAGN NGFMCGYAAS CTPAELQHEE EEEMLISSQI QHHLNQISRH  180
MNMDDEVVYD GVLDIQEHPT MVDDLLDPNH ATSFPSSSSS SSLSLRSGSF SCSPDSSAQV  240
FGAPAPAASG HYPEVSSHVP LPPAAPYTNV HVSTAPLAAT PPAAGKQASA FKSYAQHLGP  300
RRQPTKPGAC GQKMFKTAMS VLSRMHMAAS ARYNQQYYYQ QASAEAVATP PSVNQLQHMI  360
SERKRREKLN DSFQALKTVL PPGSKKDKTS ILIRAREYIR SLESKASELE EKNKELESRL  420
TGHRGSQAGA DDADADKKVQ IEITRAAKEC WAVEPRDLCT LKIVVRSRCN MTDVVLRTLQ  480
CLKDQAGDDV NLVSMNTSGS SAGPPQTSSS PRAVLTMQIK SSRGAKWEEQ PVKDAVAKVV  540
ADAALTPPSA AVDETAPRRR QQLLADKDRR PARPCLTPDD TATSHSAGVV RRGRRRWGRV  600
RFHKRDVDG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	361	366	ERKRRE
2	362	367	RKRREK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025817328.1	1e-136	putative transcription factor bHLH041
TrEMBL	A0A2T7DSE3	1e-135	A0A2T7DSE3_9POAL; Uncharacterized protein
STRING	Si001328m	1e-134	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2900	31	82