PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00178.1.g00200.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 343aa MW: 37642.5 Da PI: 6.0618

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00178.1.g00200.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.8	2e-08	152	194	7	54
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + E++RR+r+ +++ L l+P++ +K + a++ A+eYI++L Zmw_sc00178.1.g00200.1.am.mk 152 KKEKQRRQRLGEKYTALMLLIPNR-----TKDDRATVISDAIEYIQEL 194 57*******************9.....9**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.429	145	194	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.4E-5	151	200	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.9E-6	152	194	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.9E-8	154	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.02E-10	154	216	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.07E-6	154	194	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MYHPQCELLT GHDSLDLDAG QPQLTASSVA TIPTELSFQL FHSLDADAAV PPPTVDYYFG 60 GTDHQSAVQY EPLAPAGSLH TTMLRDYYPM GEPYLRGTTA GTLVFGAPDD ESVAYMDGTF 120 QSSPPPRAKG GRKRSRALSG GFHGGLVNGV EKKEKQRRQR LGEKYTALML LIPNRTKDDR 180 ATVISDAIEY IQELGRTVEE LTLLVEKKRR RRELQGDVLD AAPAVVAAGT EPESSEGEVV 240 APTPAVQQQP IRSTYIQRKS KDAFIDVRIV EEEVNIKLTK RRRDGCLAAA SRALDELRLD 300 LVHLSGGKIG DCHIYMFNTK IHPGSSVFAS AVASRLMEVV DEY

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MYHPQCELLT GHDSLDLDAG QPQLTASSVA TIPTELSFQL FHSLDADAAV PPPTVDYYFG  60
GTDHQSAVQY EPLAPAGSLH TTMLRDYYPM GEPYLRGTTA GTLVFGAPDD ESVAYMDGTF  120
QSSPPPRAKG GRKRSRALSG GFHGGLVNGV EKKEKQRRQR LGEKYTALML LIPNRTKDDR  180
ATVISDAIEY IQELGRTVEE LTLLVEKKRR RRELQGDVLD AAPAVVAAGT EPESSEGEVV  240
APTPAVQQQP IRSTYIQRKS KDAFIDVRIV EEEVNIKLTK RRRDGCLAAA SRALDELRLD  300
LVHLSGGKIG DCHIYMFNTK IHPGSSVFAS AVASRLMEVV DEY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	130	136	GRKRSRA
2	206	211	KKRRRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the E-box-containing promoter regions of the transcription factors TDR and EAT1, activating their expression. May have a role in specifying the cell pattern of the inner anther walls and functioning in meiosis progression. Required for male reproduction (PubMed:24755456). Acts downstream of UDT1 and GAMYB, but upstream of TDR1 and EAT1 in pollen development (PubMed:24894043). {ECO:0000269\|PubMed:24755456, ECO:0000269\|PubMed:24894043}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025815629.1	1e-177	transcription factor TIP2-like
Swissprot	Q5JNS0	1e-152	TIP2_ORYSJ; Transcription factor TIP2
TrEMBL	A0A1E5UWC6	0.0	A0A1E5UWC6_9POAL; Transcription factor TIP2
STRING	Pavir.Eb01270.1.p	1e-180	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1904	37	96