PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00179.1.g00280.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 193aa    MW: 21092 Da    PI: 4.7756
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00179.1.g00280.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY48.22.2e-151241602359
                                   EEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY  23 sYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                   +YYrC+  gC vkk+ver+++dp++v++tY g Hnh 
  Zmw_sc00179.1.g00280.1.am.mk 124 NYYRCSADGCGVKKRVERDRDDPRYVITTYDGVHNHA 160
                                   8***********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.3E-16103161IPR003657WRKY domain
SuperFamilySSF1182908.37E-17107160IPR003657WRKY domain
PROSITE profilePS5081117.867110162IPR003657WRKY domain
SMARTSM007742.1E-16115161IPR003657WRKY domain
PfamPF031062.0E-10121159IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MRSMAASLGL NREAEAFFNP CSAYSASSPF TTASDYTASF PTSEPVDGTA FFAELDDDRR  60
LFDFEYSPAA ASIFAVNAGD RDDDNEKKMR YAGDEKGARV NGRIGFRTRS EVEILDDGFK  120
WRKNYYRCSA DGCGVKKRVE RDRDDPRYVI TTYDGVHNHA SLAAAIVQYG GDAGAQGFYS  180
SPNSGSPPAA ASY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-17101159374Probable WRKY transcription factor 4
2lex_A3e-17101159374Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002440727.11e-62probable WRKY transcription factor 50
TrEMBLC5YU852e-61C5YU85_SORBI; Uncharacterized protein
STRINGSb09g005700.14e-62(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206