PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00195.1.g00100.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRAS

Protein Properties

Length: 845aa MW: 91815.8 Da PI: 7.274

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00195.1.g00100.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	409.5	3e-125	480	840	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaal 81 +lLl+ Ae v++++l a+++L ++ ela+p g+++qR+aayf+eA++arl++s+ +ly+ lp+++ + s++++a+ Zmw_sc00195.1.g00100.1.am.mk 480 LTLLLQSAESVNADNLDDAHQTLLEIAELATPFGTSTQRVAAYFAEAMSARLVSSCLGLYAPLPATSPAAALlNSRVATAF 560 579**********************************************************8777776656899999 PP GRAS 82 klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetg 162 ++f+ +sP++kfsh+taNqaI ea+e+e+rvHiiD+di+qGlQWp L++ LasRp+gpp++++Tg+gs s e le+tg Zmw_sc00195.1.g00100.1.am.mk 561 QVFNGISPFVKFSHFTANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPRVKLTGLGS----SMEVLEATG 637 ******************************************************************....***** PP GRAS 163 erLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvve 243 +rL++fA++lg+pf+f + va++ ++++e+L v ++Ea+aV++ + h+l+d ++s ++ +L+l+++l Pkvv++ve Zmw_sc00195.1.g00100.1.am.mk 638 KRLSDFADTLGLPFQFCA-VAEKAGNVDPEKLGVTRREAVAVHWLH--HSLYDVTGSDSN----TLWLIQRLAPKVVTMVE 711 **************.7*********************9..999999999999....************* PP GRAS 244 qeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGF 324 q+++h s+sFl+rf+ea++yysalfdsl+a+++++s er++vE++ll+rei+nv+a g +r + + +++Wre+l ++GF Zmw_sc00195.1.g00100.1.am.mk 712 QDLSH-SGSFLARFVEAIHYYSALFDSLDASYGEDSPERHVVEQQLLSREIRNVLAVGGPARSGDVK-FGSWREKLAQSGF 790 *.899************************************************988887.********* PP GRAS 325 kpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++++l +aa+qa+lll +++sdgy++ ee+g+l lgWkd L+++SaWr Zmw_sc00195.1.g00100.1.am.mk 791 RAASLAGSAAAQASLLLGMFPSDGYTLVEENGALKLGWKDLCLLTASAWR 840 ***********************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51257	5	1	30	No hit	No description
PROSITE profile	PS50985	61.519	453	820	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.1E-122	480	840	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 845 aa Download sequence Send to blast
MSEYPWRFEP LFARHIRRRS TWILPSFISC EEYHRPSDPF IVPCSSSHSS QTNGLTFKKD 60 QAAAAAAAQR SRTSTHAAVC LARSRAHSVA DRRRQPLQNE TIVDHESPRA RELKVNSYKE 120 GIFCLARSPF FFPWEWENGN EATPPHTQVS RKAGPDEEQT VRSKPQCTLI DVGPMRRRDP 180 LTLGYLRGNI CSCWPIGRRV ERVHKLALLT SCAYAMGSSS LLLFPSSASA ASRAYSSAHA 240 TTTSTLSSSH SLLPPLPSPS SYSQQDPHRL DGHQQEQVAM VRKRPAPDMD LPPPRRHVTG 300 DLSDVTAAAA AAQLPALPTQ LHLPAFQQHG GEVDVAPPQV QPGEVTTAWV DGIIRDIIGS 360 SGPANVREII HPCNPGLASV LELRLRSLLA AADPALPPPH QHPGLVHHHT AAPGSLPDKR 420 RHEAPPPPCQ EEQPQSPKAP SAEETAAAAA AAAAAAAAAA KERKEEQRRK QRDEEGLHLL 480 TLLLQSAESV NADNLDDAHQ TLLEIAELAT PFGTSTQRVA AYFAEAMSAR LVSSCLGLYA 540 PLPATSPAAA LLNSRVATAF QVFNGISPFV KFSHFTANQA IQEAFEREDR VHIIDLDIMQ 600 GLQWPGLFHI LASRPGGPPR VKLTGLGSSM EVLEATGKRL SDFADTLGLP FQFCAVAEKA 660 GNVDPEKLGV TRREAVAVHW LHHSLYDVTG SDSNTLWLIQ RLAPKVVTMV EQDLSHSGSF 720 LARFVEAIHY YSALFDSLDA SYGEDSPERH VVEQQLLSRE IRNVLAVGGP ARSGDVKFGS 780 WREKLAQSGF RAASLAGSAA AQASLLLGMF PSDGYTLVEE NGALKLGWKD LCLLTASAWR 840 PIQAA

Sequence ? help Back to Top

Protein Sequence Length: 845 aa Download sequence Send to blast

MSEYPWRFEP LFARHIRRRS TWILPSFISC EEYHRPSDPF IVPCSSSHSS QTNGLTFKKD  60
QAAAAAAAQR SRTSTHAAVC LARSRAHSVA DRRRQPLQNE TIVDHESPRA RELKVNSYKE  120
GIFCLARSPF FFPWEWENGN EATPPHTQVS RKAGPDEEQT VRSKPQCTLI DVGPMRRRDP  180
LTLGYLRGNI CSCWPIGRRV ERVHKLALLT SCAYAMGSSS LLLFPSSASA ASRAYSSAHA  240
TTTSTLSSSH SLLPPLPSPS SYSQQDPHRL DGHQQEQVAM VRKRPAPDMD LPPPRRHVTG  300
DLSDVTAAAA AAQLPALPTQ LHLPAFQQHG GEVDVAPPQV QPGEVTTAWV DGIIRDIIGS  360
SGPANVREII HPCNPGLASV LELRLRSLLA AADPALPPPH QHPGLVHHHT AAPGSLPDKR  420
RHEAPPPPCQ EEQPQSPKAP SAEETAAAAA AAAAAAAAAA KERKEEQRRK QRDEEGLHLL  480
TLLLQSAESV NADNLDDAHQ TLLEIAELAT PFGTSTQRVA AYFAEAMSAR LVSSCLGLYA  540
PLPATSPAAA LLNSRVATAF QVFNGISPFV KFSHFTANQA IQEAFEREDR VHIIDLDIMQ  600
GLQWPGLFHI LASRPGGPPR VKLTGLGSSM EVLEATGKRL SDFADTLGLP FQFCAVAEKA  660
GNVDPEKLGV TRREAVAVHW LHHSLYDVTG SDSNTLWLIQ RLAPKVVTMV EQDLSHSGSF  720
LARFVEAIHY YSALFDSLDA SYGEDSPERH VVEQQLLSRE IRNVLAVGGP ARSGDVKFGS  780
WREKLAQSGF RAASLAGSAA AQASLLLGMF PSDGYTLVEE NGALKLGWKD LCLLTASAWR  840
PIQAA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	0.0	463	841	3	380	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in asmmetric cell division in the cortex/endodermis progenitor cell and in the process of stomata and ligule formation in leaves. {ECO:0000250}.
UniProt	Probable transcription factor involved in asmmetric cell division in the cortex/endodermis progenitor cell and in the process of stomata and ligule formation in leaves. {ECO:0000269\|PubMed:12974810}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025807416.1	0.0	protein SCARECROW-like
Swissprot	A2ZHL0	0.0	SCR2_ORYSI; Protein SCARECROW 2
Swissprot	Q2QYF3	0.0	SCR2_ORYSJ; Protein SCARECROW 2
TrEMBL	A0A3L6PCB6	0.0	A0A3L6PCB6_PANMI; Scarecrow
STRING	ORUFI12G01460.1	0.0	(Oryza rufipogon)
STRING	OS12T0122000-01	0.0	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1371	38	122

Publications ? help Back to Top
Kamiya N, et al. Rice globular embryo 4 (gle4) mutant is defective in radial pattern formation during embryogenesis. Plant Cell Physiol., 2003. 44(9): p. 875-83 [PMID:14519768] Lim J, et al. Conservation and diversification of SCARECROW in maize. Plant Mol. Biol., 2005. 59(4): p. 619-30 [PMID:16244911] Kaur P, et al. Genes controlling plant growth habit in Leymus (Triticeae): maize barren stalk1 (ba1), rice lax panicle, and wheat tiller inhibition (tin3) genes as possible candidates. Funct. Integr. Genomics, 2008. 8(4): p. 375-86 [PMID:18543009] Sazuka T, et al. A rice tryptophan deficient dwarf mutant, tdd1, contains a reduced level of indole acetic acid and develops abnormal flowers and organless embryos. Plant J., 2009. 60(2): p. 227-41 [PMID:19682283] Fan T, et al. Rice osa-miR171c Mediates Phase Change from Vegetative to Reproductive Development and Shoot Apical Meristem Maintenance by Repressing Four OsHAM Transcription Factors. PLoS ONE, 2015. 10(5): p. e0125833 [PMID:26023934] Yi J, et al. OsMPK6 plays a critical role in cell differentiation during early embryogenesis in Oryza sativa. J. Exp. Bot., 2016. 67(8): p. 2425-37 [PMID:26912801] Li S, et al. Crystal Structure of the GRAS Domain of SCARECROW-LIKE7 in Oryza sativa. Plant Cell, 2016. 28(5): p. 1025-34 [PMID:27081181]