PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00195.1.g00370.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 290aa    MW: 32818.6 Da    PI: 5.7595
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00195.1.g00370.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY60.33.7e-19135199359
                                   -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SS.....STTEEEEEEES--SS- CS
                          WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversae.....dpkvveitYegeHnhe 59 
                                   Dg++WrKYGqK++++ +++rsYYrCt++   +C+++k v+++++      p + +++Y+g+H+++
  Zmw_sc00195.1.g00370.1.sm.mk 135 DGHQWRKYGQKKINNEKHSRSYYRCTYKqeqDCKATKTVQQQDKsvgadHPVMYTVVYHGQHTCK 199
                                   9**************************98999********98752222257899*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.4E-22122199IPR003657WRKY domain
SuperFamilySSF1182905.62E-20129199IPR003657WRKY domain
SMARTSM007741.3E-27133200IPR003657WRKY domain
PfamPF031066.7E-23135199IPR003657WRKY domain
PROSITE profilePS5081113.563135175IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MCGLPTGQPP ACYDPSRIVC DHRSVMMEIA REQSLVTQLR AIVLPALQAD ERSELVVHMF  60
QNILDCSSKA MAELHLLQKS DDSPAEDTPL VDDKKRIRRI PDDFNKDEDV MLHHKNKRRR  120
FAVSQSIETP VPHYDGHQWR KYGQKKINNE KHSRSYYRCT YKQEQDCKAT KTVQQQDKSV  180
GADHPVMYTV VYHGQHTCKG TNNCSNSVTD DSETKTLGQS SSYSQSSIST KDCSEPCSSD  240
QQMSQDGNEP INNSADLVAE NYMYEAFDMT AFAPLELESW DLAVLLGFGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-141351991069OsWRKY45
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977389.11e-110probable WRKY transcription factor 63
TrEMBLK3Y9721e-109K3Y972_SETIT; Uncharacterized protein
STRINGSi010764m1e-109(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32583079