PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00195.1.g00410.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 343aa    MW: 37213.5 Da    PI: 6.124
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00195.1.g00410.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY64.12.3e-20145207259
                                   --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S..SSTTEEEEEEES--SS- CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa..edpkvveitYegeHnhe 59 
                                   +Dgy+WrKYG K+ +g++f+rsY+rCt++   gC ++k v++++  +d+ ++++tY+++H+++
  Zmw_sc00195.1.g00410.1.am.mk 145 EDGYEWRKYGEKSFNGTHFTRSYFRCTYKgdkGCLATKYVQQQNdsSDTPMFKVTYNNDHTCN 207
                                   8***************************99999*******9875226899***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182907.59E-20138208IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.9E-21139207IPR003657WRKY domain
SMARTSM007742.0E-27144208IPR003657WRKY domain
PfamPF031061.6E-21145206IPR003657WRKY domain
PROSITE profilePS5081116.363145209IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MAWLPDYLEP AVREVAHVSE LIKTHQPLLL LHLQGQTAQP LAQSLLGEAL RALHLALSAM  60
TVMQQQQQQR LQIGSSSSSS SAAASLVLVV KPEPPPQLSS SPSPASELPA DSKGSARSGK  120
RRRPAANEGG GKTKSWALLT TVPHEDGYEW RKYGEKSFNG THFTRSYFRC TYKGDKGCLA  180
TKYVQQQNDS SDTPMFKVTY NNDHTCNCTA GSPSSAKNNI NNIPVAGGAA ASNYPPTGGH  240
HDFMVTEQET TAVVPPPLAD GSAGVRLDEQ MPCAHQERLA ITDRYDVTVG AVGESSRLPG  300
VSSNELDRQI VTEPMMGDYD QELQDDLELL FLHDNFCYRS TTG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805829.19e-62WRKY transcription factor 55-like
STRINGSb05g001170.11e-56(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50452663