PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00198.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HB-other

Protein Properties

Length: 98aa MW: 10907 Da PI: 7.8082

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00198.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	33.9	5.5e-11	73	98	28	53
HHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 28 eereeLAkklgLterqVkvWFqNrRa 53 +++ +LA++l+L rqV vWFqNrRa Zmw_sc00198.1.g00010.1.sm.mk 73 NQKSDLARRLNLRPRQVEVWFQNRRA 98 6899*********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00086	8.81E-7	72	98	No hit	No description
SuperFamily	SSF46689	6.68E-8	72	98	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.726	72	98	IPR001356	Homeobox domain
Pfam	PF00046	2.0E-8	73	98	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.5E-9	74	98	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 98 aa Download sequence Send to blast
MELELRLGNS SAPGKDTSTT VLTSAHGGNG EGHEIALELG TGTAKRAEQE NQKTHTGLEE 60 DDEARSQIRQ GRNQKSDLAR RLNLRPRQVE VWFQNRRA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002454030.1	3e-16	homeobox-leucine zipper protein HOX7 isoform X2
Refseq	XP_021314037.1	3e-16	homeobox-leucine zipper protein HOX7 isoform X1
TrEMBL	A0A1E5VT78	4e-15	A0A1E5VT78_9POAL; Homeobox-leucine zipper protein HOX7
STRING	Sb04g023410.1	1e-15	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12894	30	35