PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00206.1.g00150.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 173aa    MW: 18984.1 Da    PI: 11.9588
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00206.1.g00150.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF75.63.8e-24959151
                                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                  k+ien++ rqvtfskRr+g++KKA+EL +LCda++  i+f +tg+ly++ss
  Zmw_sc00206.1.g00150.1.am.mk  9 KKIENETSRQVTFSKRRAGMFKKAKELAILCDAQIGDIVFTNTGQLYDFSS 59
                                  68***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006627.446161IPR002100Transcription factor, MADS-box
SMARTSM004324.8E-31160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-23374IPR002100Transcription factor, MADS-box
CDDcd002653.08E-32361No hitNo description
PRINTSPR004049.2E-24323IPR002100Transcription factor, MADS-box
PfamPF003195.4E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004049.2E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004049.2E-243859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MVRGKTILKK IENETSRQVT FSKRRAGMFK KAKELAILCD AQIGDIVFTN TGQLYDFSSC  60
SPAPRYRATA PLRRTWAHGR LLHSLLSLGS SLISDGTRPK LRPVAPACRF RPGADAPPGV  120
PAPASSSSMK RFVRYSTPPS PSGRHQSAWP RPKPELCPTV RPAPRRRPGT ALP
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398