PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00209.1.g00360.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Trihelix

Protein Properties

Length: 175aa MW: 19872.9 Da PI: 5.1385

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00209.1.g00360.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	55.1	2e-17	31	95	1	55
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwe 55 +Wt+++v++Li+a+++++e+++++ +kk++W+++sk+m erg+++sp+qC++k + Zmw_sc00209.1.g00360.1.am.mkhc 31 KWTDSMVKLLITAVSYTGEDYGADLgggrrnfsimQKKGKWKAISKVMGERGCHVSPQQCEDKCK 95 7*******************9744455677788*************************965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.9E-12	29	96	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MSDDEEHELT EDANENPSGK GKKSSAWHRM KWTDSMVKLL ITAVSYTGED YGADLGGGRR 60 NFSIMQKKGK WKAISKVMGE RGCHVSPQQC EDKCKEDHDS RRDVFGDGDE DDQSADSDYY 120 EDDEEHHAVH TNMREPSMLK RMLHSDMALV NSSPHEGSAR NLFCIRMRFA GDLVQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001143969.2	1e-50	uncharacterized protein LOC100276786
Refseq	XP_020403187.1	1e-50	uncharacterized protein LOC100276786 isoform X1
TrEMBL	A0A1E5UTG1	9e-60	A0A1E5UTG1_9POAL; Uncharacterized protein
STRING	Sb05g003890.1	2e-49	(Sorghum bicolor)
STRING	GRMZM2G126148_P02	2e-49	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP44648	3	3