PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00212.1.g00500.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

G2-like

Protein Properties

Length: 175aa MW: 19163.5 Da PI: 6.2728

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00212.1.g00500.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	86.8	2.1e-27	18	67	2	51
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 pr+rWt+eLH++Fveave LGG+++AtPk+il+lm+v+g++++h+kSHLQ Zmw_sc00212.1.g00500.1.sm.mk 18 PRMRWTEELHRQFVEAVECLGGKDEATPKRILQLMGVDGVSISHIKSHLQ 67 8************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.9E-25	14	67	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.384	14	74	IPR017930	Myb domain
SuperFamily	SSF46689	1.08E-14	18	67	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.8E-22	18	67	IPR006447	Myb domain, plants
Pfam	PF00249	4.3E-8	19	67	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MRDFERKGVR QYNRSEVPRM RWTEELHRQF VEAVECLGGK DEATPKRILQ LMGVDGVSIS 60 HIKSHLQYPS GKQLPQVDIN RSEQQQAIRP SNNSFSKKPA EKQKGCDLTL SIGMWPEDAN 120 SDADGSSTIS EELAAPPAGA EPFGSPAAGG RFAAVKQESA PALNLDLTIS SSWLA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-16	19	67	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-16	19	67	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-16	19	67	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-16	19	67	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-16	19	67	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-16	19	67	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-16	19	67	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-16	19	67	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025810426.1	2e-39	probable transcription factor KAN3
TrEMBL	T1MM38	3e-49	T1MM38_TRIUA; Uncharacterized protein
STRING	TRIUR3_18893-P1	4e-50	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5493	37	58