PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00230.1.g00180.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Protein Properties

Length: 164aa MW: 18793.8 Da PI: 10.3026

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00230.1.g00180.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	68.4	9.8e-22	27	115	2	99
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 fk+l ++ ++rl++p +f++++g +++ ++tl+++sg ++v++ +++ g+ v+++GWk Fv+a++Lk gDf+ Zmw_sc00230.1.g00180.1.es.mkhc 27 FKIL--VGNF-RSRLMIPDNFVQHFGARPTG--MVTLKSRSGYAFDVEV--TNRLGKLVFQTGWKAFVNAHDLKRGDFL 98 5655..3344.567******777888766..8***********..************************ PP EEEE-SSSEE..EEEEE-S CS B3 81 vFkldgrsefelvvkvfrk 99 vFk++g s+f +v +f+ Zmw_sc00230.1.g00180.1.es.mkhc 99 VFKYNGFSQF--KVLIFDP 115 **988999..9999885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	6.8E-26	19	128	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.96E-25	21	123	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	13.69	23	116	IPR003340	B3 DNA binding domain
CDD	cd10017	1.95E-21	24	114	No hit	No description
SMART	SM01019	4.2E-13	26	116	IPR003340	B3 DNA binding domain
Pfam	PF02362	5.7E-19	26	114	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MRKPHKGCKE MNGHHKPNHK DKDRHFFKIL VGNFRSRLMI PDNFVQHFGA RPTGMVTLKS 60 RSGYAFDVEV TNRLGKLVFQ TGWKAFVNAH DLKRGDFLVF KYNGFSQFKV LIFDPSCCEK 120 VLPCPLEKNE IEMCKEPVKS SSSCVNPSMK SPESNGKAWT KREG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025796557.1	3e-53	putative B3 domain-containing protein Os03g0621600 isoform X1
TrEMBL	A0A2S3IK24	8e-53	A0A2S3IK24_9POAL; Uncharacterized protein
TrEMBL	A0A2T7C3Q1	2e-52	A0A2T7C3Q1_9POAL; Uncharacterized protein
STRING	Pavir.Ia01270.1.p	3e-54	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2901	29	85