PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00248.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TALE
Protein Properties Length: 179aa    MW: 20486.1 Da    PI: 10.1318
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00248.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.11.2e-071021342355
                                   SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                      Homeobox  23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 
                                   r +++ e++ LA+++gL+++q+ +WF N+R ++
  Zmw_sc00248.1.g00010.1.am.mk 102 RRLQELEKAALADSTGLDTKQINNWFINQRKRH 134
                                   667888999*********************885 PP
2ELK36.41.2e-123960122
                           ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                                  ELK++Ll+KYsgyL+sL+ E+s
  Zmw_sc00248.1.g00010.1.am.mk 39 ELKNRLLNKYSGYLSSLWRELS 60
                                  9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011889.5E-73960IPR005539ELK domain
PROSITE profilePS5121310.513959IPR005539ELK domain
PfamPF037896.4E-103960IPR005539ELK domain
PROSITE profilePS500719.99360137IPR001356Homeobox domain
SuperFamilySSF466897.7E-1362140IPR009057Homeodomain-like
SMARTSM003897.2E-662141IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.3E-2365138IPR009057Homeodomain-like
CDDcd000864.76E-969137No hitNo description
PfamPF059201.0E-1080133IPR008422Homeobox KN domain
PROSITE patternPS000270112135IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MFQADDKSYE LGGGSSDEDE HETGGDVDGL PETSGEDKEL KNRLLNKYSG YLSSLWRELS  60
RKKKKKGKLP REARQKLLHW WQMHYRWPYP SVHLRPLMIL SRRLQELEKA ALADSTGLDT  120
KQINNWFINQ RKRHWKPAPP PKLALNYRLG GASSSTAHHA ALHTEGQYFT GGSAYSRGP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002464092.13e-72homeobox protein knotted-1-like 4
SwissprotQ75LX78e-58KNOS4_ORYSJ; Homeobox protein knotted-1-like 4
TrEMBLA0A1E5W2S04e-71A0A1E5W2S0_9POAL; Homeobox protein knotted-1-like 4
TrEMBLC5WPQ57e-71C5WPQ5_SORBI; Uncharacterized protein
STRINGSb01g012200.11e-71(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47462950