PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00258.1.g00190.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 642aa    MW: 69559 Da    PI: 8.9492
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00258.1.g00190.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.3e-12426469755
                                   HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   ++Er RR+r+N+++  Lr+++P+      +K++Ka+i + A+ YI +Lq
  Zmw_sc00258.1.g00190.1.am.mk 426 AMERDRRRRLNEKLYALRSVVPNI-----TKMDKASIIRDAIAYIEKLQ 469
                                   79*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.025419468IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-16419484IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-15425474IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-9426469IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.02E-14426473No hitNo description
Gene3DG3DSA:4.10.280.101.0E-15426488IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 642 aa     Download sequence    Send to blast
LNTIPLPPLH FWCCPIPTGN RLPPSRLLFD VLALSLSRLV ICASTLSTAA VPVDALPHPA  60
PRRSGTSDSS HLLVPMGHRR AGCANGPIGL APEHGTLQHG PHSPSCLVGY AYLGLGTSWC  120
DTVTALDSGS KAWRVLDVEQ GTHVVVAVAC CPPQLASHRR DRPPHLAHHH RSCRACTPHF  180
GLASMSFSPI PITGGQPTRV EWSRYLGPRR GLSGPPPFPA LTSGVSIHLL VTRCSLLSVS  240
SLLCVAWLRS SSPFQIKHWR FSRKNMAISG WQTRALDQRA WRVQVRHASS CLQLASVQGQ  300
SVPELGLQMD VLGVGFDFYW TPPPRLVLDT PDLDDLSDFS FSRYLLLLCF FLVMMAGIVD  360
CNCVSMYMPV APADSLSSGL YPYREGSNSP DGANSYTTAA AVPTAPSSPP PQQLMPGRDA  420
ASRNMAMERD RRRRLNEKLY ALRSVVPNIT KMDKASIIRD AIAYIEKLQE EERRMLAEIA  480
ALESSTAAVE AEDAGGLAAD DADSFPCPKK PRRAPPADDG ARCAPSAPPV QILEEMRSCD  540
AQVQVSEAGE RVAVVSVRCS RGRDAVSKVC RALEPLRLRI VTATVAAVGD TVVHTIATSQ  600
LVSLPSTGTP HRRQRQVHPL VATHANRALA RTHTAPKRRV LL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-15417497282Transcription factor MYC2
5gnj_B7e-15417497282Transcription factor MYC2
5gnj_E7e-15417497282Transcription factor MYC2
5gnj_F7e-15417497282Transcription factor MYC2
5gnj_G7e-15417497282Transcription factor MYC2
5gnj_I7e-15417497282Transcription factor MYC2
5gnj_M7e-15417497282Transcription factor MYC2
5gnj_N7e-15417497282Transcription factor MYC2
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133