PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00263.1.g00120.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 217aa MW: 24951.4 Da PI: 9.8127

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00263.1.g00120.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	54.2	2.6e-17	83	129	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+ellP++ K +K+++L +A++Y+ksLq Zmw_sc00263.1.g00120.1.sm.mk 83 FHNFSERRRRDRINEKLKALQELLPNC-----SKTDKVSMLDEAIDYLKSLQ 129 59**********************9.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.3E-19	76	136	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.4E-21	77	146	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	18.508	79	128	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.35E-17	82	133	No hit	No description
Pfam	PF00010	1.3E-14	84	129	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.3E-18	85	134	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MAGESQNDKA GRIGTVQTQS SLISPAMTQK FIEIRWHEYY SGLNVGGSNR PDHRLGEVSQ 60 ELMEEGRVPR STPPTRRSRS AEFHNFSERR RRDRINEKLK ALQELLPNCS KTDKVSMLDE 120 AIDYLKSLQL QLQMLVMGKG LAPVVPPELP QYMHYIKADP AQMPSPFRPS QQPRPFQITQ 180 ADPQRKYVES DFLSQMQNLH PSDQPPQNFL RPQKLQL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	87	92	ERRRRD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022684500.1	1e-87	transcription factor PIF1
TrEMBL	A0A1D6DZ90	1e-90	A0A1D6DZ90_MAIZE; Protein SPATULA
STRING	Si011759m	5e-87	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9562	30	43