PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00277.1.g00260.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 220aa    MW: 23872.8 Da    PI: 7.6738
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00277.1.g00260.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.31.6e-1240781556
                           AP2 15 WvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56
                                  W+AeIrdp     +  +r++lg+f+t e Aa a++ a+++++g+
  Zmw_sc00277.1.g00260.1.sm.mk 40 WAAEIRDP-----HraARVWLGTFDTVEAAALAYDVAALRFRGN 78
                                  *******7.....338*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103215.8041786IPR001471AP2/ERF domain
SMARTSM003801.2E-123386IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-173778IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-123980IPR016177DNA-binding domain
PfamPF008474.8E-74077IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MDFFLPVPVP VPESITTYPT VQFSPHARSK FAVNQSSVTW AAEIRDPHRA ARVWLGTFDT  60
VEAAALAYDV AALRFRGNFP ESAALPAAPT VPQAASEPPP ARPEGVLESQ AAMMMGDGGG  120
EYAEYARFLQ GAGEPPRFVD QTVARAPQTP SAVPVPGAAH HFRPQSSRSS IHRSCQFLVR  180
ALGGGLRRRQ ETPQDDTCAR ARPQRSDTAD LTLLTFLDHR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3L6Q1585e-27A0A3L6Q158_PANMI; Putative AP2/EREBP transcription factor superfamily protein
STRINGPavir.Ha01720.1.p6e-26(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98942540