PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00277.1.g00270.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 365aa    MW: 38596.5 Da    PI: 10.6177
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00277.1.g00270.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.91.4e-19159208255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                                   +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a++ a+++++g
  Zmw_sc00277.1.g00270.1.am.mk 159 RYRGVRQRP-WGKWAAEIRDP-----HraARVWLGTFDTAEAAARAYDVAALQFRG 208
                                   7********.**********7.....338************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-32159218IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-22159218IPR016177DNA-binding domain
PfamPF008471.1E-13159208IPR001471AP2/ERF domain
PROSITE profilePS5103225.949159216IPR001471AP2/ERF domain
SMARTSM003802.4E-35159222IPR001471AP2/ERF domain
PRINTSPR003679.0E-12160171IPR001471AP2/ERF domain
CDDcd000182.13E-15167218No hitNo description
PRINTSPR003679.0E-12182198IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
LATWDAEEAK KSVTLLNSSA AASACRHVSL YICCAPKVAT SPPAGGGSGE QRRRLAGVAE  60
EGGEERSAVD SASSTPSMPL SQSRRDREMS AMVAALSAVV AGEAAVAPEG ASSAACYDYG  120
SAAVATPYTP PFATTASSPS PSAQLASPSS SSDARRRRRY RGVRQRPWGK WAAEIRDPHR  180
AARVWLGTFD TAEAAARAYD VAALQFRGAR AKLNFPESAA LPAPTAPRVA SVPPPPEWPE  240
GVLESQAPMM MGDGGEYAEY ARFLQGAGAP PRLVDQTVAR APQTPSAVLV PGAAPHFRPQ  300
SSRSEPPPPL PVPRPGFGRP LSLRMTRARV RTNKDQLPLT RRFRCSGRPL QDGENLRAPP  360
STARR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-21158216463ATERF1
3gcc_A6e-21158216463ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619856.16e-44ethylene-responsive transcription factor ERF110
TrEMBLB8BND07e-42B8BND0_ORYSI; Uncharacterized protein
STRINGORUFI12G04720.16e-42(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98942540