PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00282.1.g00210.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NF-YB

Protein Properties

Length: 538aa MW: 58950.9 Da PI: 6.4231

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00282.1.g00210.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	182.7	3e-57	341	436	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyvep 82 reqdrflPianvsrimkk+lPanakiskdaketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfedyv+p Zmw_sc00282.1.g00210.1.am.mk 341 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVDP 421 89***************************************************************************** PP NF-YB 83 lkvylkkyrelegek 97 lk yl+k+re+ege+ Zmw_sc00282.1.g00210.1.am.mk 422 LKHYLHKFREIEGER 436 **********997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	3.2E-55	338	461	IPR009072	Histone-fold
SuperFamily	SSF47113	7.14E-41	343	466	IPR009072	Histone-fold
Pfam	PF00808	3.1E-27	346	410	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	7.1E-19	374	392	No hit	No description
PROSITE pattern	PS00685	0	377	393	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	7.1E-19	393	411	No hit	No description
PRINTS	PR00615	7.1E-19	412	430	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 538 aa Download sequence Send to blast
MDLFERKPLI RSLIEEELFR LSEEAEKEEL EEEEEAEAKA RAEQSTKDCG NGNEKDVRGD 60 GKAEDASKEN NSNVAIHGDN DGREKEGNID AEQSPTDSGS DAKVEDANHK VNTEIDVDCP 120 KDGAVENGKT GDDVKDDSNG IAKGSQIANP TWQTGQSCTS QVGRRPTCFR AHRNGQDASY 180 VVSIHAFPGP PQRPGCVLRG VHPRRCHRQV AHTYQETNGL RRTTFTPGCI LIRAIQRTRH 240 SPPPSRFKLE LRRPHSSRKF SPFLSFLSSV DPACCSYTTR DWLQLFDEIS IGFSVHRALF 300 LELSNRGGRE DRPERGGLGM PDSNNDSGEP SNAGGELSSP REQDRFLPIA NVSRIMKKAL 360 PANAKISKDA KETVQECVSE FISFITGEAS DKCQREKRKT INGDDLLWAM TTLGFEDYVD 420 PLKHYLHKFR EIEGERAAAS SGAGSSTAAT QQQHQHQQND MSRNANAGAA YGGYGAGGMM 480 MMMGQPMYGG STQQQPPPPQ QQQHQQHHMA MPGRGGYGHP SGGGGSSSSS GLGRQDRA

Sequence ? help Back to Top

Protein Sequence Length: 538 aa Download sequence Send to blast

MDLFERKPLI RSLIEEELFR LSEEAEKEEL EEEEEAEAKA RAEQSTKDCG NGNEKDVRGD  60
GKAEDASKEN NSNVAIHGDN DGREKEGNID AEQSPTDSGS DAKVEDANHK VNTEIDVDCP  120
KDGAVENGKT GDDVKDDSNG IAKGSQIANP TWQTGQSCTS QVGRRPTCFR AHRNGQDASY  180
VVSIHAFPGP PQRPGCVLRG VHPRRCHRQV AHTYQETNGL RRTTFTPGCI LIRAIQRTRH  240
SPPPSRFKLE LRRPHSSRKF SPFLSFLSSV DPACCSYTTR DWLQLFDEIS IGFSVHRALF  300
LELSNRGGRE DRPERGGLGM PDSNNDSGEP SNAGGELSSP REQDRFLPIA NVSRIMKKAL  360
PANAKISKDA KETVQECVSE FISFITGEAS DKCQREKRKT INGDDLLWAM TTLGFEDYVD  420
PLKHYLHKFR EIEGERAAAS SGAGSSTAAT QQQHQHQQND MSRNANAGAA YGGYGAGGMM  480
MMMGQPMYGG STQQQPPPPQ QQQHQQHHMA MPGRGGYGHP SGGGGSSSSS GLGRQDRA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	3e-42	335	431	1	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP201	38	331