PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00291.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 957aa MW: 102314 Da PI: 9.4756

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00291.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.6	1e-05	572	594	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ Cgk F r nL+ H r H Zmw_sc00291.1.g00010.1.am.mk 572 YVCEVCGKGFQRDQNLQLHRRGH 594 9*******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.74E-8	571	594	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.0E-5	572	594	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.0081	572	594	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.822	572	594	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	574	594	IPR007087	Zinc finger, C2H2
SMART	SM00355	34	614	644	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	3.74E-8	644	669	No hit	No description
SMART	SM00355	250	649	669	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 957 aa Download sequence Send to blast
LHCRRRVESS RDERRGGGSR EGARKRTEGV VGLVNGAWEV APWQQGDLAA WPLPLDVGAT 60 CPHALEPAKR RSLSSFGSDS NEHTRTQPID DAPSNTVRVG YATEERNLVR ATGRGRPVPV 120 VPGGSTRAAG GVASVLETVR TPSKCLDRNL HQVLRGRAHL LRRLRTELES RVVSKLGREF 180 LSQSYMAAGC LSRLFWRSAN CVLQATAPPS TSEIENRRHE LVVVGICGEN VLLEIRRLGV 240 VQSTRDCRYM RLPVSVHHWA SPPPQKILIG SAGPPPGKHK LGRRPVYIAD NFIVLRSSSE 300 VSTDIAADAV VSVVSFTDVV CLCAPGRTPV ISLINLLALL ITSSATDQVN MPRPWVGTEL 360 PLASSCSATA RDAVVVNVVR ALQTGGECSS SIRGRGEWNQ RKRQKAPRAV WPSCCSLPEA 420 GAALDQLNLT ERPRHARREE VSTPVPTAVA TAGSSRTSTS RSGPAPACAR ADPFVNYSSK 480 RGWVLLASEE GEEEDREEAM MLKDLAAIQQ QQQLAADENM SNLTSASGDQ ASVSSHPLPP 540 PAKKKRSLPG NPDPDAEVIA LSPRTLMATN RYVCEVCGKG FQRDQNLQLH RRGHNLPWKL 600 KQRNPKDVAR KKVYVCPEPG CVHNDPARAL GDLTGIKKHF SRKHGEKKWK CDRCSKRYAV 660 HSDWKAHSKV CGTRERDSFI THRAFCDALA EESARAVTAA AAVAGQQHPG MLFPHAGAGG 720 GAGLQLPSVL DPSQPLGGHG LSLQEMCLKR EQQPFSWLAA QQQQQQMDMP GAGLSSTVFG 780 SARPLDQDYV GSSTPDSNSQ PAGLTFGFSP SSAAGTASAA HMSATALLQK AAQMGATLSR 840 PSNQGQMAST HSRSATTNAA TATAPASAAA TSNVTSTGLN FGASHFGTDE RSDREAAGNA 900 AGAGGANDGH TRDFLGLRAF SHGDILSIAG FDPCMSSASS SAAAYEQGHP NSKQWHV

Sequence ? help Back to Top

Protein Sequence Length: 957 aa Download sequence Send to blast

LHCRRRVESS RDERRGGGSR EGARKRTEGV VGLVNGAWEV APWQQGDLAA WPLPLDVGAT  60
CPHALEPAKR RSLSSFGSDS NEHTRTQPID DAPSNTVRVG YATEERNLVR ATGRGRPVPV  120
VPGGSTRAAG GVASVLETVR TPSKCLDRNL HQVLRGRAHL LRRLRTELES RVVSKLGREF  180
LSQSYMAAGC LSRLFWRSAN CVLQATAPPS TSEIENRRHE LVVVGICGEN VLLEIRRLGV  240
VQSTRDCRYM RLPVSVHHWA SPPPQKILIG SAGPPPGKHK LGRRPVYIAD NFIVLRSSSE  300
VSTDIAADAV VSVVSFTDVV CLCAPGRTPV ISLINLLALL ITSSATDQVN MPRPWVGTEL  360
PLASSCSATA RDAVVVNVVR ALQTGGECSS SIRGRGEWNQ RKRQKAPRAV WPSCCSLPEA  420
GAALDQLNLT ERPRHARREE VSTPVPTAVA TAGSSRTSTS RSGPAPACAR ADPFVNYSSK  480
RGWVLLASEE GEEEDREEAM MLKDLAAIQQ QQQLAADENM SNLTSASGDQ ASVSSHPLPP  540
PAKKKRSLPG NPDPDAEVIA LSPRTLMATN RYVCEVCGKG FQRDQNLQLH RRGHNLPWKL  600
KQRNPKDVAR KKVYVCPEPG CVHNDPARAL GDLTGIKKHF SRKHGEKKWK CDRCSKRYAV  660
HSDWKAHSKV CGTRERDSFI THRAFCDALA EESARAVTAA AAVAGQQHPG MLFPHAGAGG  720
GAGLQLPSVL DPSQPLGGHG LSLQEMCLKR EQQPFSWLAA QQQQQQMDMP GAGLSSTVFG  780
SARPLDQDYV GSSTPDSNSQ PAGLTFGFSP SSAAGTASAA HMSATALLQK AAQMGATLSR  840
PSNQGQMAST HSRSATTNAA TATAPASAAA TSNVTSTGLN FGASHFGTDE RSDREAAGNA  900
AGAGGANDGH TRDFLGLRAF SHGDILSIAG FDPCMSSASS SAAAYEQGHP NSKQWHV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	4e-21	645	695	3	64	Zinc finger protein JACKDAW
5b3h_F	4e-21	645	695	3	64	Zinc finger protein JACKDAW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	598	611	KLKQRNPKDVARKK

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320