PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00296.1.g00530.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 465aa MW: 49792.2 Da PI: 8.8912

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00296.1.g00530.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.3	3.2e-14	241	292	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ ++ + + a+i+ A++Y+++L+ Zmw_sc00296.1.g00530.1.am.mk 241 QRMTHIAVERNRRRQMNEHLAVLRSLMPPS---YAHRGDQASIVGGAINYVRELE 292 79**************************...9****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.32E-14	239	296	No hit	No description
PROSITE profile	PS50888	15.859	240	291	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.1E-14	240	296	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.27E-17	240	306	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.7E-11	241	292	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-10	246	297	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence Send to blast
MAMHTKLELD EQGDMVGSPV PATNNGTGPP DREPDHPPPP SMGHGTRNNT PSFYSLCKSW 60 PGPSPKAQNP ARGCRVRVRL TRDSRLIKRG VAGQPGEHAH TRRSPTRLLL ASRVRSSPIT 120 KFRACVCAAG LLAMALEAVV FSQAGAGHFG YGRVDSPYTM PWCDLPGATG FGFAGDWGYD 180 GLLASVAPDG ADEWETASAK QDQSSEASAV GKGTAEPAAA AGRRKRRRAK VVKNKEEIET 240 QRMTHIAVER NRRRQMNEHL AVLRSLMPPS YAHRGDQASI VGGAINYVRE LEQLLQSLEV 300 QKSIKNRDAG CSCTDAAGKS PFAGFFTFPQ YSTSSSHAGC AAAATSSNNT SNVANGEAAG 360 SGASGDRAPA VADIEVTMVE GHASLKVLVP QRPKQLLKLV AGLQHLRVPP LHLNVTSVDA 420 MVLYTFSLKV EDDSKMGSVE DIATAVHEIL SRIRRQEVEE ETAVM

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence Send to blast

MAMHTKLELD EQGDMVGSPV PATNNGTGPP DREPDHPPPP SMGHGTRNNT PSFYSLCKSW  60
PGPSPKAQNP ARGCRVRVRL TRDSRLIKRG VAGQPGEHAH TRRSPTRLLL ASRVRSSPIT  120
KFRACVCAAG LLAMALEAVV FSQAGAGHFG YGRVDSPYTM PWCDLPGATG FGFAGDWGYD  180
GLLASVAPDG ADEWETASAK QDQSSEASAV GKGTAEPAAA AGRRKRRRAK VVKNKEEIET  240
QRMTHIAVER NRRRQMNEHL AVLRSLMPPS YAHRGDQASI VGGAINYVRE LEQLLQSLEV  300
QKSIKNRDAG CSCTDAAGKS PFAGFFTFPQ YSTSSSHAGC AAAATSSNNT SNVANGEAAG  360
SGASGDRAPA VADIEVTMVE GHASLKVLVP QRPKQLLKLV AGLQHLRVPP LHLNVTSVDA  420
MVLYTFSLKV EDDSKMGSVE DIATAVHEIL SRIRRQEVEE ETAVM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	223	227	RKRRR
2	241	252	RMTHIAVERNRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025796362.1	1e-130	transcription factor bHLH94-like
TrEMBL	A0A0A9F3U9	1e-139	A0A0A9F3U9_ARUDO; Uncharacterized protein
STRING	Pavir.J40759.1.p	1e-130	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP741	38	156