PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00305.1.g00100.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NF-YC

Protein Properties

Length: 212aa MW: 22192.6 Da PI: 4.4854

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00305.1.g00100.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	48.2	2.3e-15	92	173	20	100
NF-YC 20 elPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtr.tdifdflvdivprd 99 lPl r+k+i+++d d+k++++ea +l+s a elf+ l+ + a rr+++ + + aav + dfl+d p d Zmw_sc00305.1.g00100.1.sm.mk 92 VLPLGRVKRIIRVDRDIKKVTSEAAMLISAATELFLGSLAAGAHTAAAALGRRAVRAAHVRAAVRAhRPTADFLLDCLPVD 172 59***********************************************************97515699*****998 PP NF-YC 100 e 100 e Zmw_sc00305.1.g00100.1.sm.mk 173 E 173 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	2.01E-15	91	171	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	2.0E-16	92	156	IPR009072	Histone-fold
Pfam	PF00808	2.1E-12	93	155	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MATAGDPTEE VEHVGEETID AMEPVGEGTT EAMEQVGEET TDAMEQVGEE SGGPTEVSGK 60 KPDAEATEHI GEEPEREEAD AEEAGGASLR PVLPLGRVKR IIRVDRDIKK VTSEAAMLIS 120 AATELFLGSL AAGAHTAAAA LGRRAVRAAH VRAAVRAHRP TADFLLDCLP VDEEAPRARS 180 TAGSGSGRGG DGEAKSLPRG TRRIDAFFQK VT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025879187.1	7e-46	tropomyosin
TrEMBL	A0A3B6EFW6	3e-45	A0A3B6EFW6_WHEAT; Uncharacterized protein
TrEMBL	A0A446N6Y2	3e-45	A0A446N6Y2_TRITD; Uncharacterized protein
STRING	Pavir.J40808.1.p	1e-45	(Panicum virgatum)
STRING	ORUFI01G05810.1	3e-45	(Oryza rufipogon)
STRING	OS01T0183400-00	3e-45	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13342	26	28