PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00305.1.g00120.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WRKY

Protein Properties

Length: 259aa MW: 27919.1 Da PI: 10.5213

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00305.1.g00120.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.2	3.1e-32	181	239	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+ Zmw_sc00305.1.g00120.1.am.mk 181 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHS 239 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.4E-33	166	239	IPR003657	WRKY domain
SuperFamily	SSF118290	1.83E-28	173	240	IPR003657	WRKY domain
PROSITE profile	PS50811	29.356	176	241	IPR003657	WRKY domain
SMART	SM00774	9.8E-37	181	240	IPR003657	WRKY domain
Pfam	PF03106	4.3E-25	182	238	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MFPSPGRAAM ALGLGAQQLS STAAAGTSST PTVTFAFQPA PRTSDHSHHH HHHGVLGYGS 60 SHVLDRPTTA TSSSSSHAAA PSSTVPSSNL HHLQAAAAAH FSLPTRSSPP HPWSSDERNQ 120 DKQRGKGATL TPGGGGLQHG AAAAALGVGA VRMKKAGGGK ARRKMREPRF CFKTMSDVDV 180 LDDGYKWRKY GQKVVKNTQH PRSYYRCTQD NCRVKKRVER LAEDPRMVIT TYEGRHVHSP 240 SHDDDDAAAR ANAEMTFLW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	5e-26	172	238	8	74	Probable WRKY transcription factor 4
2lex_A	5e-26	172	238	8	74	Probable WRKY transcription factor 4
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001132878.1	1e-101	uncharacterized protein LOC100194371
TrEMBL	B4FIG2	1e-100	B4FIG2_MAIZE; Putative WRKY transcription factor 13
STRING	GRMZM2G151444_P01	1e-100	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1138	38	130