PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00318.1.g00060.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 818aa MW: 86101.8 Da PI: 10.1049

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00318.1.g00060.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.4	1.6e-08	224	267	3	44
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrw 44 W++eEd l+ a++++G g+W+ I + + +Rt q+ rw Zmw_sc00318.1.g00060.1.sm.mkhc 224 TWSKEEDVDLAAAIQKYGEGNWEIILDKCNfrSTRTSDQLSQRW 267 7***************************************9999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.1E-10	216	269	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.311	217	276	IPR017930	Myb domain
SuperFamily	SSF46689	8.61E-11	220	279	IPR009057	Homeodomain-like
SMART	SM00717	1.3E-6	221	273	IPR001005	SANT/Myb domain
Pfam	PF00249	2.6E-7	224	267	IPR001005	SANT/Myb domain
CDD	cd11660	2.29E-14	225	272	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 818 aa Download sequence Send to blast
MAATTAPAAG MGKGKRKRPL SEDDVYLILH RSVLPTRSTT AACRAILRRY APATILTALQ 60 EVAEHAHGRR IDWKALVGKS ATGITSAREY QMLWRHFAYQ HELAESIDAG SSPLGDDSDL 120 ECELEPVPNP SKEVLSEASS LAKILISGSS HEQAGHRVNL ETSAQNSANG KIVRVPSDKQ 180 LAQNQRLTNV SGPISNSKQT SQTGPSPDPS DANGASKKKK KIKTWSKEED VDLAAAIQKY 240 GEGNWEIILD KCNFRSTRTS DQLSQRWALI SKRPGLSKPA TTKQVSITSS EERMATRKAL 300 SMAVDYNPCT RKPSAVRLGA QQFSSQHTST VFGTTIPEIK SAAAPFAAPR QAPVPIQAPV 360 TMPLPVTVQV LAPVQQAQQA PAQVPPPKAP NASNKTRNNS KKQVVPQNPP VVSCSIQAAA 420 IAAGGRIATP TAAANHLKAT QSKNAVHIKT RVAVSSKSST CSKGSNIVVE PRTQIGGAEH 480 IELSNTAATI SAPSILLTHA AQQILDISEV SAANPPGPPS GAHFTDTKKA LSASAVPASC 540 DSEEQDDDDT ICMVTMEDLF PEDANQPESV NPKEKQPEAI GPRERQQDSI DLKEKQQGVL 600 GLKTKQPETK NLRVEGIVDS KDADMLEFDQ FVASQGGTSV KMDYLDTSNT VRSAPTTQGS 660 TGSQKKQLKS VPAAGRGNSI YSATPSSGKK TKVPHPVSLM PTGTPWVNVS AHSTAQNKPV 720 EKKTAAPATS SGQNLLMKKQ AVNTKGNQTP NSVAVGVTSV APGSSMASTV VNPPGSSQAG 780 TVVNGASKAN PPGSSQTSTL VNGSSKVNPP GPSQASKV

Sequence ? help Back to Top

Protein Sequence Length: 818 aa Download sequence Send to blast

MAATTAPAAG MGKGKRKRPL SEDDVYLILH RSVLPTRSTT AACRAILRRY APATILTALQ  60
EVAEHAHGRR IDWKALVGKS ATGITSAREY QMLWRHFAYQ HELAESIDAG SSPLGDDSDL  120
ECELEPVPNP SKEVLSEASS LAKILISGSS HEQAGHRVNL ETSAQNSANG KIVRVPSDKQ  180
LAQNQRLTNV SGPISNSKQT SQTGPSPDPS DANGASKKKK KIKTWSKEED VDLAAAIQKY  240
GEGNWEIILD KCNFRSTRTS DQLSQRWALI SKRPGLSKPA TTKQVSITSS EERMATRKAL  300
SMAVDYNPCT RKPSAVRLGA QQFSSQHTST VFGTTIPEIK SAAAPFAAPR QAPVPIQAPV  360
TMPLPVTVQV LAPVQQAQQA PAQVPPPKAP NASNKTRNNS KKQVVPQNPP VVSCSIQAAA  420
IAAGGRIATP TAAANHLKAT QSKNAVHIKT RVAVSSKSST CSKGSNIVVE PRTQIGGAEH  480
IELSNTAATI SAPSILLTHA AQQILDISEV SAANPPGPPS GAHFTDTKKA LSASAVPASC  540
DSEEQDDDDT ICMVTMEDLF PEDANQPESV NPKEKQPEAI GPRERQQDSI DLKEKQQGVL  600
GLKTKQPETK NLRVEGIVDS KDADMLEFDQ FVASQGGTSV KMDYLDTSNT VRSAPTTQGS  660
TGSQKKQLKS VPAAGRGNSI YSATPSSGKK TKVPHPVSLM PTGTPWVNVS AHSTAQNKPV  720
EKKTAAPATS SGQNLLMKKQ AVNTKGNQTP NSVAVGVTSV APGSSMASTV VNPPGSSQAG  780
TVVNGASKAN PPGSSQTSTL VNGSSKVNPP GPSQASKV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004952835.1	0.0	nascent polypeptide-associated complex subunit alpha, muscle-specific form
TrEMBL	K3YPR8	0.0	K3YPR8_SETIT; Uncharacterized protein
STRING	Si016260m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4684	37	54