PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00320.1.g00430.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB

Protein Properties

Length: 180aa MW: 20084 Da PI: 9.7929

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00320.1.g00430.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.1	4.2e-18	92	139	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +lvd+vk++G g+W+++ + g+ R++k+c++rw ++l Zmw_sc00320.1.g00430.1.am.mk 92 KGPWTSAEDSILVDYVKKHGEGNWNAVQKNTGLSRCGKSCRLRWANHL 139 79******************************************9996 PP
2	Myb_DNA-binding	24.4	6.8e-08	145	174	1	31
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartm 31 +g++T++E+ l+++++ ++G++ W++ a+++ Zmw_sc00320.1.g00430.1.am.mk 145 KGAFTPDEERLIIQLHSKMGNK-WARMAAHV 174 799*****************.***997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	23.31	87	143	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-23	88	142	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.92E-25	89	174	IPR009057	Homeodomain-like
SMART	SM00717	7.8E-15	91	141	IPR001005	SANT/Myb domain
Pfam	PF00249	5.8E-16	92	139	IPR001005	SANT/Myb domain
CDD	cd00167	4.05E-12	94	139	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.7E-14	143	174	IPR009057	Homeodomain-like
SMART	SM00717	0.94	144	180	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	9.918	144	180	IPR017930	Myb domain
Pfam	PF00249	4.7E-7	145	174	IPR001005	SANT/Myb domain
CDD	cd00167	8.93E-4	147	174	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MRPRPIACLL WRSEILLRFP LLSSPSFQQS AAELTRAGEP LVELNSAHPG LDRLRRLRDS 60 SESDCEMVPL DQMDSPAADD GGSPHRGPPL KKGPWTSAED SILVDYVKKH GEGNWNAVQK 120 NTGLSRCGKS CRLRWANHLR PNLKKGAFTP DEERLIIQLH SKMGNKWARM AAHVSAMLIS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	2e-21	87	171	22	105	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator of gibberellin-dependent alpha-amylase expression in aleurone cells. Involved in pollen and floral organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase promoter. {ECO:0000269\|PubMed:9150608}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By gibberellin in aleurone cells. {ECO:0000269\|PubMed:9150608}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003564452.1	4e-68	transcription factor GAMYB
Swissprot	A2WW87	2e-67	GAM1_ORYSI; Transcription factor GAMYB
TrEMBL	A0A0C6WCK4	4e-68	A0A0C6WCK4_9POAL; ScMYB9 protein
TrEMBL	I1HSP4	9e-67	I1HSP4_BRADI; Uncharacterized protein
STRING	BRADI2G53010.1	1e-67	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3947	36	64