PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00322.1.g00040.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 293aa    MW: 30793.4 Da    PI: 9.3589
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00322.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.00097113133121
                                   EEETTTTEEESSHHHHHHHHH CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHir 21 
                                   y+C+dCg+s+     L  H +
  Zmw_sc00322.1.g00040.1.am.mk 113 YTCKDCGRSYAKFRALGGHVS 133
                                   9*********88777766665 PP
2zf-C2H216.81.9e-05172194123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C +Cgk+Fs    L  H+r H
  Zmw_sc00322.1.g00040.1.am.mk 172 HVCRKCGKVFSKGTALGGHMRAH 194
                                   79*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.62E-8113135No hitNo description
SMARTSM0035517113135IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.141113140IPR007087Zinc finger, C2H2
PfamPF139120.0031113133IPR007087Zinc finger, C2H2
PROSITE patternPS000280115135IPR007087Zinc finger, C2H2
SuperFamilySSF576674.62E-8167194No hitNo description
Gene3DG3DSA:3.30.160.601.3E-5171196IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.2E-8171194IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.612172199IPR007087Zinc finger, C2H2
SMARTSM003550.048172194IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280174194IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MSPPLRRLRP DDDDADKGRF VSDDGVRDLR PQSPTRTWES DRTISDDDDD VSPASVLRTE  60
PNERVVGVDG GWATTGKRSR STEGKQAATA APAAKQIPRP LPPPRDDQAP LKYTCKDCGR  120
SYAKFRALGG HVSWHRIRER EAAAAAAAAA GTGAQDGGAL AHRGRKSEGR THVCRKCGKV  180
FSKGTALGGH MRAHAGDAAV APVVPEGNKK RCLEPAVDDF VASSTPGLSS AAPIVPEGNK  240
KRCHEPAVDD VAAPPTAGVS SAAPIKTEEA SSPAPVRSGR VLLFGVDISR PPV
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18437610