PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00324.1.g00240.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

G2-like

Protein Properties

Length: 353aa MW: 36526.1 Da PI: 10.4566

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00324.1.g00240.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	35.8	1.7e-11	253	277	2	26
G2-like 2 prlrWtpeLHerFveaveqLGGsek 26 pr+rWt++LH+rFv+ave LGG+e+ Zmw_sc00324.1.g00240.1.am.mk 253 PRMRWTSTLHARFVHAVELLGGHER 277 9*********************997 PP
2	G2-like	38.4	2.8e-12	318	342	27	51
G2-like 27 AtPktilelmkvkgLtlehvkSHLQ 51 AtPk++l+lm+vk+Ltl+hvkSHLQ Zmw_sc00324.1.g00240.1.am.mk 318 ATPKSVLQLMDVKDLTLAHVKSHLQ 342 9************************ PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.7E-23	251	277	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.7E-23	318	342	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.6E-7	318	342	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MEATASAPDL SLHISLPSGN AASPSSAPGL GAGGVVGGRG AAGSPGGDPW RRLNGSTAST 60 ELSLSPPQRQ QEGPASALPW RLWPSTAANA PSSSSSASSA EAAAFLPVTV PGLSLDAAAS 120 AEAARGPPIN GVPVYSSPGA GSSPFLGADD YRQRQPKVGL YNPYPSSAWP SSLRSTTAAV 180 LAPVDTTTAA FHHSPSAYHR MLSGTGRLQL HGALADTLRG YGAGHQQYFG SSLASSRYVP 240 RLPAASRRCM RAPRMRWTST LHARFVHAVE LLGGHEREWS PPAGQFLGNL GSLHARVTRS 300 AKLLRLISLS PYVHGPGATP KSVLQLMDVK DLTLAHVKSH LQASELSPPA EVL

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MEATASAPDL SLHISLPSGN AASPSSAPGL GAGGVVGGRG AAGSPGGDPW RRLNGSTAST  60
ELSLSPPQRQ QEGPASALPW RLWPSTAANA PSSSSSASSA EAAAFLPVTV PGLSLDAAAS  120
AEAARGPPIN GVPVYSSPGA GSSPFLGADD YRQRQPKVGL YNPYPSSAWP SSLRSTTAAV  180
LAPVDTTTAA FHHSPSAYHR MLSGTGRLQL HGALADTLRG YGAGHQQYFG SSLASSRYVP  240
RLPAASRRCM RAPRMRWTST LHARFVHAVE LLGGHEREWS PPAGQFLGNL GSLHARVTRS  300
AKLLRLISLS PYVHGPGATP KSVLQLMDVK DLTLAHVKSH LQASELSPPA EVL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates abaxial identity during leaf development. {ECO:0000269\|PubMed:18594992}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025820100.1	9e-94	probable transcription factor RL9 isoform X2
Swissprot	Q0J235	7e-42	ROLL9_ORYSJ; Probable transcription factor RL9
TrEMBL	A0A3L6RKZ8	1e-99	A0A3L6RKZ8_PANMI; Putative transcription factor RL9
STRING	Pavir.Fb00812.1.p	4e-98	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2558	37	87