PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00331.1.g00320.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 357aa MW: 38161.2 Da PI: 9.7871

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00331.1.g00320.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	120.9	7e-38	72	168	1	96
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i Zmw_sc00331.1.g00320.1.am.mk 72 PCGACKFLRRKCVSGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLQIPAHKRLDAVVTICYEAQARLRDPVYGCVAHI 152 7*********************9989************************************************* PP DUF260 81 lklqqqleqlkaelal 96 ++lqqq + +++e+a+ Zmw_sc00331.1.g00320.1.am.mk 153 FALQQQQRAVRKEAAK 168 *******9999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.847	71	173	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.8E-37	72	167	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MPSIRFYTTI PPCLPLILSP PERRVLPRCL HPPPDLRLRA MSSGGCTSTP PGCGGGGCPS 60 GSGGPGGGGG GPCGACKFLR RKCVSGCIFA PYFDSEQGAA HFAAVHKVFG ASNVSKLLLQ 120 IPAHKRLDAV VTICYEAQAR LRDPVYGCVA HIFALQQQQR AVRKEAAKPG TLLRAGTRRI 180 LRRRIVIPAV RCLPPPVAYY YAVVHLGLRI VLGWWCQRQS LVVNLQAELT YLQAHLATLE 240 LPSPPPLPAP PQMPVPAPFN IADLPSATNV PTTVDLSALF DTPPQAHQWA SVQQQHHHQL 300 RQPTMTSYGA SVRGGHGMAE SSSAGGGGDL QALARELLDR HRSGVKLESP PPPPPHS

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MPSIRFYTTI PPCLPLILSP PERRVLPRCL HPPPDLRLRA MSSGGCTSTP PGCGGGGCPS  60
GSGGPGGGGG GPCGACKFLR RKCVSGCIFA PYFDSEQGAA HFAAVHKVFG ASNVSKLLLQ  120
IPAHKRLDAV VTICYEAQAR LRDPVYGCVA HIFALQQQQR AVRKEAAKPG TLLRAGTRRI  180
LRRRIVIPAV RCLPPPVAYY YAVVHLGLRI VLGWWCQRQS LVVNLQAELT YLQAHLATLE  240
LPSPPPLPAP PQMPVPAPFN IADLPSATNV PTTVDLSALF DTPPQAHQWA SVQQQHHHQL  300
RQPTMTSYGA SVRGGHGMAE SSSAGGGGDL QALARELLDR HRSGVKLESP PPPPPHS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-34	68	165	7	103	LOB family transfactor Ramosa2.1
5ly0_B	3e-34	68	165	7	103	LOB family transfactor Ramosa2.1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020160420.1	2e-71	LOB domain-containing protein 30
TrEMBL	A0A0E0GJP4	3e-87	A0A0E0GJP4_ORYNI; Uncharacterized protein
STRING	ONIVA03G11070.1	5e-88	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP42174	3	3