PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00341.1.g00150.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 147aa MW: 16326.3 Da PI: 4.1878

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00341.1.g00150.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.3	1.5e-09	83	119	11	52
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 +RR+riN+++ L+el+P+ +K++ +++Le+AveY+ Zmw_sc00341.1.g00150.1.am.mk 83 KRRQRINERLRMLQELIPNG-----TKVEISTMLEEAVEYLL 119 7***************97.....8************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.395	72	121	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0045	79	125	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.4E-8	83	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-7	83	118	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.7E-7	83	119	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.10E-9	83	120	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 147 aa Download sequence Send to blast
MEMVDCAAGW SSVDTNCKES EMIAHLQSVF WGGSCDLDVV DPSLSSTNTS VQETGQGSGS 60 KRKSQPDDLV ISGEEEYCPV PAKRRQRINE RLRMLQELIP NGTKVEISTM LEEAVEYLLS 120 SDEMWMYAPL AYRGINFGVH VDASTQE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020163880.1	9e-38	transcription factor bHLH139-like
Swissprot	Q3E7L7	7e-24	BH139_ARATH; Transcription factor bHLH139
TrEMBL	A0A3B5Z334	7e-38	A0A3B5Z334_WHEAT; Uncharacterized protein
STRING	EMT06884	3e-36	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP46879	3	3

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]