PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00355.1.g00480.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

FAR1

Protein Properties

Length: 246aa MW: 27969.9 Da PI: 8.321

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00355.1.g00480.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	29.2	3.1e-09	103	164	2	73
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekd 73 +Yn ++ e GF +r ++++++++ + ++k+++vC ++g++ k+ + r+gCka++++++++d Zmw_sc00355.1.g00480.1.sm.mk 103 YYNLHSWEKGFVIRCNSNETNRN-NYVMKKELVCMCQGQPGAGIKT---------SIRCGCKARMVLRRTDD 164 8*************9999955.55**********999888.........99********99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.5E-6	103	164	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MCLGLAQKSA TVVIEITEEA RMDDNTSEEI DTAVGTCVAP CTTWAIVRHR KLGVNGPSSR 60 APVVGRRSAI EEALLSFKDR AAECVNAPAV GITFDSYEEG FHYYNLHSWE KGFVIRCNSN 120 ETNRNNYVMK KELVCMCQGQ PGAGIKTSIR CGCKARMVLR RTDDHGFPNR NFRIYAERSM 180 WAKLYFAEVF YAGQTSTQRS ENANHMLKNK VPPDALMHVF VRQYMKLLSQ RIEEEDFEER 240 RSKLGH

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP619	19	91