PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00355.1.g00510.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C3H

Protein Properties

Length: 364aa MW: 39351 Da PI: 8.8815

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00355.1.g00510.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.8	6.6e-07	316	339	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 t++C +f C+ G++C+F H+ Zmw_sc00355.1.g00510.1.am.mkhc 316 TKPCAYFNTARGCRNGANCTFLHD 339 89*********************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.235	313	341	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.5E-6	316	339	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.3E-4	316	339	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.22E-5	318	343	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MTGSRRSSRV SWATGPNLCK VRLFLSDDSP SQAGLRPQDN LQAKGSWLVH AAGPSSDDSL 60 PPGFESLQPT NNVKIDISKV PLIRWRCPPK MLLNPGWHIV AGEESVESAT QNERIFGALE 120 AMYPRQSNIP PNPFVSPDLI DSHYDDSRTQ SDKYESAVIS VPPVSDASTT TATEHQPSGL 180 IGSASAGIPA EPDVLAAASA AYTAVMESTQ MGNPMVTYQN LNPTLRSPPV LNRLPQAVAS 240 VSMNPPASSS QGLNFSRGIN YYKTLIQQHG GERQEPLEHH GTQFGMYQQS NPTQASNVYV 300 ARSGAVQSQY TKARPTKPCA YFNTARGCRN GANCTFLHDG SAARKEQPKG AKRLKLDSRI 360 AGQY

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MTGSRRSSRV SWATGPNLCK VRLFLSDDSP SQAGLRPQDN LQAKGSWLVH AAGPSSDDSL  60
PPGFESLQPT NNVKIDISKV PLIRWRCPPK MLLNPGWHIV AGEESVESAT QNERIFGALE  120
AMYPRQSNIP PNPFVSPDLI DSHYDDSRTQ SDKYESAVIS VPPVSDASTT TATEHQPSGL  180
IGSASAGIPA EPDVLAAASA AYTAVMESTQ MGNPMVTYQN LNPTLRSPPV LNRLPQAVAS  240
VSMNPPASSS QGLNFSRGIN YYKTLIQQHG GERQEPLEHH GTQFGMYQQS NPTQASNVYV  300
ARSGAVQSQY TKARPTKPCA YFNTARGCRN GANCTFLHDG SAARKEQPKG AKRLKLDSRI  360
AGQY

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004960188.1	1e-170	zinc finger CCCH domain-containing protein 30
Swissprot	Q7XM16	1e-84	C3H30_ORYSJ; Zinc finger CCCH domain-containing protein 30
TrEMBL	A0A0A9CYC0	1e-173	A0A0A9CYC0_ARUDO; Uncharacterized protein
STRING	Sb06g031850.1	1e-167	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8680	10	13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]