PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00361.1.g00090.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 376aa MW: 40363.8 Da PI: 10.5584

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00361.1.g00090.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.9	5.5e-11	183	230	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h+e+ErrRR+riN +++Lr+++ + +sk ++Ka+ L A+ +k+L Zmw_sc00361.1.g00090.1.am.mk 183 VHSEAERRRRERINAHLATLRRVMVVP---DSKQMDKATLLATAISQLKDL 230 59***********************...9999*********999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.649	179	230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-12	182	254	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.1E-9	183	230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-10	183	237	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.9E-9	185	236	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:3.30.70.260	5.8E-5	277	333	No hit	No description
SuperFamily	SSF55021	1.83E-5	277	334	No hit	No description
CDD	cd04873	7.63E-8	277	340	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MKPIVVQLAP SQQGASLPPS PRMMNQGWAP NGSFYLFSIK MSVPLLLVDR RLGVKAKGGR 60 MRTHADGRPL RSSPPTEGDD DESLQFAFAI EGDGGLGRGQ TSAMSCRPFQ TGAQQREQRH 120 TPAPLQQHGV VRGRLPSSEY RGAATALQQA ISTSVPAPAS LQERSLSSSL SGRSAAEERA 180 LKVHSEAERR RRERINAHLA TLRRVMVVPD SKQMDKATLL ATAISQLKDL RRKASVITHP 240 PPLVPAEADS VTVHCHPHPD AGAGDDNRAT LYVHACVSCD DRPGLLADIA TAVHALRLRP 300 LRADVSSLGG RTRCSFVLST EGGDGNMVTR SLEEDVRQVL AGAAFAEMAR GCGGGSTSKR 360 QRVLEPRALY SGGMNR

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MKPIVVQLAP SQQGASLPPS PRMMNQGWAP NGSFYLFSIK MSVPLLLVDR RLGVKAKGGR  60
MRTHADGRPL RSSPPTEGDD DESLQFAFAI EGDGGLGRGQ TSAMSCRPFQ TGAQQREQRH  120
TPAPLQQHGV VRGRLPSSEY RGAATALQQA ISTSVPAPAS LQERSLSSSL SGRSAAEERA  180
LKVHSEAERR RRERINAHLA TLRRVMVVPD SKQMDKATLL ATAISQLKDL RRKASVITHP  240
PPLVPAEADS VTVHCHPHPD AGAGDDNRAT LYVHACVSCD DRPGLLADIA TAVHALRLRP  300
LRADVSSLGG RTRCSFVLST EGGDGNMVTR SLEEDVRQVL AGAAFAEMAR GCGGGSTSKR  360
QRVLEPRALY SGGMNR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	187	192	ERRRRE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004978282.1	7e-64	transcription factor bHLH51
TrEMBL	A0A1E5W3S1	4e-63	A0A1E5W3S1_9POAL; Uncharacterized protein
STRING	Pavir.J32610.1.p	6e-60	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3347	36	78