PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00361.1.g00190.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 251aa MW: 26481.2 Da PI: 10.3451

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00361.1.g00190.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	104.5	9.1e-33	52	165	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal..............peeeredamsslvyeAea 67 +CaaCk+lrr+Ca++C+++ yf +p+kfa+vhk+FGasnv+k+l + +e++r da++slvyeA+ Zmw_sc00361.1.g00190.1.sm.mk 52 PCAACKLLRRRCAQECPFSLYFSPLEPHKFAAVHKVFGASNVSKMLLTHyrsirfhkisikevHESQRADAANSLVYEANL 132 7*****************************************985542222333333333367777********* PP DUF260 68 rardPvyGavgvilklqqqleqlkaelallkee 100 r+rdPvyG++g il+lqqq++ l+aela++++e Zmw_sc00361.1.g00190.1.sm.mk 133 RLRDPVYGCMGAILTLQQQVQALEAELAAVRAE 165 ***************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.215	51	166	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.1E-34	52	163	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MKLKPHWQDH EVGRKIKKES AAAAADRMTA AAAAGAGSAG AGPGSALNTI TPCAACKLLR 60 RRCAQECPFS LYFSPLEPHK FAAVHKVFGA SNVSKMLLTH YRSIRFHKIS IKEVHESQRA 120 DAANSLVYEA NLRLRDPVYG CMGAILTLQQ QVQALEAELA AVRAEIVRRR YRPAAAASAA 180 GVATVLPSSH ASQLLAASAA GRGLPAASAR SAATRTATLA ALSSSSSTVY AAASNSTDYS 240 SITNENVPYF R

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-36	52	187	11	127	LOB family transfactor Ramosa2.1
5ly0_B	2e-36	52	187	11	127	LOB family transfactor Ramosa2.1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020167556.1	1e-108	LOB domain-containing protein 15-like
Swissprot	Q9AT61	2e-63	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A3B5ZSF7	1e-106	A0A3B5ZSF7_WHEAT; Uncharacterized protein
TrEMBL	A0A452Y3K0	1e-106	A0A452Y3K0_AEGTS; Uncharacterized protein
TrEMBL	A0A452Y3X4	1e-106	A0A452Y3X4_AEGTS; Uncharacterized protein
STRING	Traes_1DS_BB8508CC6.1	1e-107	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2630	38	91

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]