PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00363.1.g00170.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 394aa MW: 42283.7 Da PI: 6.5821

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00363.1.g00170.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	53.2	5.5e-17	254	299	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 hn ErrRRdriN+++ L+el+P++ K +Ka+iL +A+eY+ksL Zmw_sc00363.1.g00170.1.am.mkhc 254 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASILDEAIEYMKSL 299 5***********************8.....6**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	5.93E-18	245	304	No hit	No description
SuperFamily	SSF47459	5.63E-20	248	312	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	18.406	250	299	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.1E-21	254	309	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.3E-14	254	299	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.1E-17	256	305	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence Send to blast
ISPNNCDEMD CNARSSAASQ KKPIIADSDL VELLWHNGSV VAQPQAHQPA APPPSDRPSS 60 SGLTGEETAA WFPDTLDDAL EKDLYTQLWY SAIADASPQP GDAIPGPRSQ PPLGMAHPAR 120 PPVGSGVESS WAGDICSAFC GSNQVFSGVP AGDRAEDTAL PSEPAPCGTS TRDGAGTGTS 180 SSGGSGSNFG GSRLRSDSGH AHKKRGRCRD DTDSRSEVFL ELTRKLQAVE CEATEVTKSS 240 RRHGSKRRTR TAEVHNLSER RRRDRINEKM RALQELIPHC NKTDKASILD EAIEYMKSLK 300 MQVQMQNIHL REVSNPFLYP DGEQTAAPEV PRSHGYGTQT AQTAQPNRIP ELPGPHGYGT 360 QTAQTAQFSR IPKVPASTVL PTSTVGQPPT YDGV

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence Send to blast

ISPNNCDEMD CNARSSAASQ KKPIIADSDL VELLWHNGSV VAQPQAHQPA APPPSDRPSS  60
SGLTGEETAA WFPDTLDDAL EKDLYTQLWY SAIADASPQP GDAIPGPRSQ PPLGMAHPAR  120
PPVGSGVESS WAGDICSAFC GSNQVFSGVP AGDRAEDTAL PSEPAPCGTS TRDGAGTGTS  180
SSGGSGSNFG GSRLRSDSGH AHKKRGRCRD DTDSRSEVFL ELTRKLQAVE CEATEVTKSS  240
RRHGSKRRTR TAEVHNLSER RRRDRINEKM RALQELIPHC NKTDKASILD EAIEYMKSLK  300
MQVQMQNIHL REVSNPFLYP DGEQTAAPEV PRSHGYGTQT AQTAQPNRIP ELPGPHGYGT  360
QTAQTAQFSR IPKVPASTVL PTSTVGQPPT YDGV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	245	262	KRRTRTAEVHNLSERRRR
2	258	263	ERRRRD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act as negative regulator of phyB-dependent light signal transduction (PubMed:17485859). Transcription activator that acts as positive regulator of internode elongation. May function via regulation of cell wall-related genes. May play a role in a drought-associated growth-restriction mechanism in response to drought stress (PubMed:22984180). {ECO:0000269\|PubMed:17485859, ECO:0000269\|PubMed:22984180}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by light in dark-grown etiolated seedlings (PubMed:17485859). Circadian oscillation under 12 h light/12 h dark cycle conditions, with peaks in the middle of the light period (PubMed:17485859, PubMed:22984180). Down-regulated by cold and drought stresses (PubMed:22984180). {ECO:0000269\|PubMed:17485859, ECO:0000269\|PubMed:22984180}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004981539.1	1e-124	transcription factor PIF4 isoform X1
Refseq	XP_004981540.1	1e-124	transcription factor PIF4 isoform X1
Refseq	XP_012704121.1	1e-124	transcription factor PIF4 isoform X1
Swissprot	Q10CH5	4e-92	PIL13_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13
TrEMBL	A0A1E5URH3	1e-133	A0A1E5URH3_9POAL; Transcription factor PIF5
STRING	Pavir.Ia00490.1.p	1e-124	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3174	34	82

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa. Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91 [PMID:17485859] Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15. N Biotechnol, 2011. 28(6): p. 788-97 [PMID:21549224] Todaka D, et al. Rice phytochrome-interacting factor-like protein OsPIL1 functions as a key regulator of internode elongation and induces a morphological response to drought stress. Proc. Natl. Acad. Sci. U.S.A., 2012. 109(39): p. 15947-52 [PMID:22984180]