PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00369.1.g00280.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 305aa MW: 32390.5 Da PI: 10.3323

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00369.1.g00280.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.2	2.5e-15	121	165	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ +++ + ++lG+g+W+ I+r++ ++Rt+ q+ s+ qky Zmw_sc00369.1.g00280.1.sm.mkhc 121 PWTEDEHRRFLAGLEKLGKGDWRGISRHFVTTRTPTQVASHAQKY 165 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50158	8.68	3	18	IPR001878	Zinc finger, CCHC-type
PROSITE profile	PS51294	20.171	114	170	IPR017930	Myb domain
SuperFamily	SSF46689	3.14E-18	115	171	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.6E-19	117	169	IPR006447	Myb domain, plants
SMART	SM00717	1.5E-11	118	168	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.3E-11	118	164	IPR009057	Homeodomain-like
CDD	cd00167	6.05E-10	121	166	No hit	No description
Pfam	PF00249	2.5E-12	121	165	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MARKCSSCGN NGHNSRTCSG GYRSMESTGV CGSSGGVRLF GVQLHVGSSP TPMKKCFSME 60 CLSSSAPAYY AAALAGACSS SPSASSSSSL VSVDETAEKM TNGYLSDGLM GRAQERKKGV 120 PWTEDEHRRF LAGLEKLGKG DWRGISRHFV TTRTPTQVAS HAQKYFLRQS SLTQKKRRSS 180 LFDVVENAEG PTRVNGRLKL RDETSSMSET EFPALSLGVS SRPKPEHALP PGLALAPRFS 240 ASTSSSGSAS PNLIAPRHPS LTTPKPAPVS LQAPDLELKI STARPTDQAA GPPPRTPFFG 300 TIRVT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015625837.1	1e-114	transcription factor MYBS3-like
TrEMBL	A0A0A9ESZ5	1e-145	A0A0A9ESZ5_ARUDO; Uncharacterized protein
STRING	ORUFI01G06450.1	1e-118	(Oryza rufipogon)
STRING	ORGLA01G0055800.1	1e-118	(Oryza glaberrima)
STRING	OBART01G05900.1	1e-118	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4231	38	73