PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00379.1.g00030.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NF-YC
Protein Properties Length: 236aa    MW: 26327.1 Da    PI: 4.9924
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00379.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC130.36.3e-41881911101
                         NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksd 78 
                                   ql++ w+++    ek+t+fk +++Pl+rikki+kad dvkm++ eaPv+++kace+fi eltlr+wl+a+  kr tl++ d
  Zmw_sc00379.1.g00030.1.sm.mk  88 QLQALWADKmaeSEKETEFKLNAIPLTRIKKIMKADRDVKMVAGEAPVVFAKACEMFIQELTLRAWLKARWFKRMTLRRKD 168
                                   79999*9985556899***************************************************************** PP

                         NF-YC  79 iaaavtrtdifdflvdivprdel 101
                                   + aa+ + d+fdflvdi+p del
  Zmw_sc00379.1.g00030.1.sm.mk 169 VVAAIIQNDMFDFLVDIIPPDEL 191
                                   *******************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.85E-2472182IPR009072Histone-fold
PfamPF008087.4E-15111173IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.102.0E-29112187IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MSIRGRLKCV FDMEQPSPAN VNGGVTDSDT SAASSPMPYE HVPLAYVPPS AGAAIPPSSQ  60
SASVERQNAF HRTLQLDQQK QQQYLQEQLQ ALWADKMAES EKETEFKLNA IPLTRIKKIM  120
KADRDVKMVA GEAPVVFAKA CEMFIQELTL RAWLKARWFK RMTLRRKDVV AAIIQNDMFD  180
FLVDIIPPDE LKEAGVAAML PPTTAPAMGP SYVPEMTYEN HEQQRSTSDG VGDELD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B2e-3399187694NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGPavir.Fa02054.1.p3e-53(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP157031216