PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00382.1.g00370.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 215aa MW: 24795.7 Da PI: 10.2698

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00382.1.g00370.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.9	4e-06	21	43	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H Zmw_sc00382.1.g00370.1.am.mk 21 FVCEVCNKGFQREQNLQLHRRGH 43 89*******************88 PP
2	zf-C2H2	13.3	0.00025	98	120	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H + + Zmw_sc00382.1.g00370.1.am.mk 98 WKCDKCSKRYAVQSDWKAHSKIC 120 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	2.3E-6	20	43	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.67E-8	20	43	No hit	No description
SMART	SM00355	0.0041	21	43	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	1.1E-5	21	43	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	11.094	21	43	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	23	43	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	1.1E-4	86	119	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.67E-8	93	118	No hit	No description
SMART	SM00355	140	98	118	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MDPDAEVIAL SPKTLLATNR FVCEVCNKGF QREQNLQLHR RGHNLPWKLK QKNPLQAQRR 60 RVYLCPEPTC VHHDPSRALG DLTGIKKHFC RKHGEKKWKC DKCSKRYAVQ SDWKAHSKIC 120 GTREYRCDCG TVFSRYATSP GDPFYVFLLP SFSAWYRHGV LHHVSLGFGL GFCLGLRRHG 180 CGWLWSSPDV TRKKKTHPNT GVRKKHAVLE NCSHM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-20	94	135	3	44	Zinc finger protein JACKDAW
5b3h_F	2e-20	94	135	3	44	Zinc finger protein JACKDAW
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	192	196	KKKTH

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.
UniProt	Transcription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269\|PubMed:24821766, ECO:0000305\|PubMed:19726569}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by gibberellin. {ECO:0000305\|PubMed:17933900}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015626115.1	9e-96	protein indeterminate-domain 4, chloroplastic
Refseq	XP_015626116.1	9e-96	protein indeterminate-domain 4, chloroplastic
Refseq	XP_015626117.1	9e-96	protein indeterminate-domain 4, chloroplastic
Refseq	XP_015626118.1	9e-96	protein indeterminate-domain 4, chloroplastic
Swissprot	O22759	3e-84	IDD12_ARATH; Protein indeterminate-domain 12
Swissprot	Q8GYC1	3e-83	IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBL	A0A0D3F8R4	2e-95	A0A0D3F8R4_9ORYZ; Uncharacterized protein
TrEMBL	A0A0D9VJC5	2e-94	A0A0D9VJC5_9ORYZ; Uncharacterized protein
TrEMBL	A0A0D9YWA5	2e-94	A0A0D9YWA5_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0GB50	2e-94	A0A0E0GB50_ORYNI; Uncharacterized protein
TrEMBL	A0A0E0K3G3	2e-94	A0A0E0K3G3_ORYPU; Uncharacterized protein
TrEMBL	A0A0E0NJ25	2e-94	A0A0E0NJ25_ORYRU; Uncharacterized protein
TrEMBL	B8AGE9	2e-94	B8AGE9_ORYSI; Uncharacterized protein
TrEMBL	Q6EU15	2e-94	Q6EU15_ORYSJ; Finger protein pcp1-like
STRING	OGLUM02G28000.1	3e-95	(Oryza glumipatula)
STRING	ORUFI02G28900.1	4e-95	(Oryza rufipogon)
STRING	OS02T0672100-01	3e-95	(Oryza sativa)
STRING	ONIVA02G30280.1	3e-95	(Oryza nivara)
STRING	OPUNC02G25110.1	3e-95	(Oryza punctata)
STRING	OBART02G27440.1	4e-96	(Oryza barthii)
STRING	LPERR02G22320.1	3e-95	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]