PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00389.1.g00150.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 299aa    MW: 31993.1 Da    PI: 9.1527
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00389.1.g00150.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.72.3e-14110161155
                                   CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++ + + a+i+  A++Y+++L+
  Zmw_sc00389.1.g00150.1.sm.mk 110 QRMTHIAVERNRRRQMNEYLAVLRSLMPPS---YAHRGDQASIVGGAINYVRELE 161
                                   79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.68E-15108165No hitNo description
Gene3DG3DSA:4.10.280.103.8E-14109165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-17109173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.904109160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-11110161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.1E-11115166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MALEAVVFSQ QAGGHFGYGR VDSPYALPWC DLPGSAGFGF AGAGWDPDGL HASVAAPDVV  60
DEWETASAKQ DQSSEASTEG KTAAVPAAAP ERRKRRRTKV VKNKEEIETQ RMTHIAVERN  120
RRRQMNEYLA VLRSLMPPSY AHRGDQASIV GGAINYVREL EQLLQSLEVQ RSIKSRVGCS  180
CTDAAGKSPF AGFFTFPQYS TSSTHAGCGT ATTASSSNST SSVVTGDAAG SATTARPAAV  240
ADIEVTMVEG HASLKVLARR RPKQLLRLVA ALQQLRVPPL HLNVTSLDGM VLYTFSLKV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19296RKRRR
29297RKRRRT
3110121RMTHIAVERNRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796362.11e-122transcription factor bHLH94-like
SwissprotQ9C7T49e-65BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0A9F3U91e-130A0A0A9F3U9_ARUDO; Uncharacterized protein
STRINGPavir.Ia04907.1.p1e-123(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]