PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00393.1.g00140.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 225aa    MW: 23440.4 Da    PI: 9.6889
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00393.1.g00140.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.32.5e-202980156
                           AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                                  ++++GVr ++ +gr++AeIrdp    k+ r++lg+++taeeAa+a++aa+++++g+
  Zmw_sc00393.1.g00140.1.sm.mk 29 PHFRGVRKRP-WGRFAAEIRDPA---KKSRVWLGTYDTAEEAARAYDAAAREFRGA 80
                                  689*******.**********83...36*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.7E-142979IPR001471AP2/ERF domain
CDDcd000181.15E-182989No hitNo description
Gene3DG3DSA:3.30.730.103.4E-323088IPR001471AP2/ERF domain
PROSITE profilePS5103223.9863087IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-223088IPR016177DNA-binding domain
SMARTSM003803.5E-363093IPR001471AP2/ERF domain
PRINTSPR003671.1E-103142IPR001471AP2/ERF domain
PRINTSPR003671.1E-105369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MAPSTAEKSP VPPATGLGLG VGGGVGLGPH FRGVRKRPWG RFAAEIRDPA KKSRVWLGTY  60
DTAEEAARAY DAAAREFRGA KAKTNFPHAS QCPVPTGGGS PSSNSTVESS GGGAQAPPVQ  120
GMPLPPTLDL DIFRRAAVRF PFKGFQVARP APNPYFFYEQ AAAAAAAAAG YRMFKVVPPV  180
TVAALAQSDS DSSSVIDHTP SPPAVTAKKE AAFDLDLNWP PPAED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-222887363ATERF1
3gcc_A7e-222887363ATERF1
5wx9_A4e-212388473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970251.12e-92ethylene-responsive transcription factor 4
TrEMBLK3XLF65e-91K3XLF6_SETIT; Uncharacterized protein
STRINGSi002729m9e-92(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38463174