PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00400.1.g00230.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 206aa MW: 21985.1 Da PI: 9.21

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00400.1.g00230.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.4	1.2e-08	24	90	5	55
HHHHHHHHHHHHHHHHHHHHCTSCC.C.................TTS-.STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.as..............kapskK.lsKaeiLekAveYIksLq 55 + +E++RR +++ +L +l+P+ a ++psk ++ + Le A YIk+L+ Zmw_sc00400.1.g00230.1.sm.mkhc 24 RKDVEKNRRLHMKGLCLKLSSLIPPsAAakhasllaaapascSNPSKDtVTQLDHLENAAAYIKQLK 90 5789*******************555**********7777777**************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.077	19	89	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.0E-10	21	98	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.2E-8	22	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-5	24	89	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MKSRRQSSGE GATHSGGGGC KMERKDVEKN RRLHMKGLCL KLSSLIPPSA AAKHASLLAA 60 APASCSNPSK DTVTQLDHLE NAAAYIKQLK GRIEELKRRK GGGGGGSFHG QGPTAAVDTG 120 VRMPVIEVRY QDGTLEVVLV SEAGRPFKLH EVITVLEQEG AEVVSASFSG VGDKIFYTIH 180 SQAISSRIGL EPSRVSERLE DLLILD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004967963.1	3e-97	transcription factor bHLH168
TrEMBL	K3XLS4	7e-96	K3XLS4_SETIT; Uncharacterized protein
STRING	Si002847m	1e-96	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP829	36	133