PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00400.1.g00250.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 419aa MW: 45337.4 Da PI: 11.1701

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00400.1.g00250.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.2	1.6e-09	40	88	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-..STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskK..lsKaeiLekAveYIksL 54 +e+ErrRR++++s ++L +l+Pk +s K ++ L +A YIk+L Zmw_sc00400.1.g00250.1.am.mk 40 KEIERRRRQHMKSLCSKLVSLIPKeH---YSSKntMTQLGSLDEAAAYIKKL 88 79********************55...45444799***********99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.88E-10	26	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.664	34	88	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.11E-7	39	92	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.3E-12	39	102	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.2E-7	40	88	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.7E-7	40	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence Send to blast
MEKTAKKSGS GDTAAAAGKR SSTSNNNSGS SGTTAAVDRK EIERRRRQHM KSLCSKLVSL 60 IPKEHYSSKN TMTQLGSLDE AAAYIKKLKE RVDDLQQKRS SAQLLASMRG GGVGASTSVA 120 AVTAMSSDAG SSEEVAVAED ESVAPVVEVR QHDDGLGLDV VLISSVERPF KMHDVVTVLE 180 EEGTEIINAN FSVAGRKNFY TIHCRSLFLE AENARSTTLA WNVCLPLLET SSLLFLSIAD 240 NSSLLPPNLR QCFWPTRRWG RRSPAVLSRA LHRQGVRSRW ILALKKKVMQ LRPTTLGRAG 300 RRADGRSRSA KVGRVSAPTT SGINTWNNWL HAASNERPLG STICDSSERR PRSARRAAST 360 HGPGGRSAQA ASGELAAGRR GRARGCTLAV GHALDSRLLY VTRTGSRHGW ISLLCARLQ

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence Send to blast

MEKTAKKSGS GDTAAAAGKR SSTSNNNSGS SGTTAAVDRK EIERRRRQHM KSLCSKLVSL  60
IPKEHYSSKN TMTQLGSLDE AAAYIKKLKE RVDDLQQKRS SAQLLASMRG GGVGASTSVA  120
AVTAMSSDAG SSEEVAVAED ESVAPVVEVR QHDDGLGLDV VLISSVERPF KMHDVVTVLE  180
EEGTEIINAN FSVAGRKNFY TIHCRSLFLE AENARSTTLA WNVCLPLLET SSLLFLSIAD  240
NSSLLPPNLR QCFWPTRRWG RRSPAVLSRA LHRQGVRSRW ILALKKKVMQ LRPTTLGRAG  300
RRADGRSRSA KVGRVSAPTT SGINTWNNWL HAASNERPLG STICDSSERR PRSARRAAST  360
HGPGGRSAQA ASGELAAGRR GRARGCTLAV GHALDSRLLY VTRTGSRHGW ISLLCARLQ

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP829	36	133