PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00401.1.g00080.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 207aa MW: 22612.7 Da PI: 10.7495

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00401.1.g00080.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.1	5.6e-15	98	142	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++ + ++lG+g+W+ Ia+ + ++Rt+ q+ s+ qky Zmw_sc00401.1.g00080.1.sm.mkhc 98 PWTEEEHRTFLAGLEKLGKGDWRGIAKNFVTTRTPTQVASHAQKY 142 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.968	91	147	IPR017930	Myb domain
SuperFamily	SSF46689	5.1E-18	92	147	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.0E-19	94	146	IPR006447	Myb domain, plants
SMART	SM00717	1.4E-11	95	145	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.5E-12	98	141	IPR009057	Homeodomain-like
CDD	cd00167	4.81E-11	98	143	No hit	No description
Pfam	PF00249	9.0E-13	98	142	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MSRAPMTRDA RPGAMRLFGV TIAPAPEVDP SSQDPSPNPP LAAREDVMRK CKSMGNLAAV 60 AAASVDGSGA GDGYHSDDGL MQSSGKRRRA QERKKAVPWT EEEHRTFLAG LEKLGKGDWR 120 GIAKNFVTTR TPTQVASHAQ KYFLRQTNPN KKKRRSSLFD MMLGDAEVVS SSNTGNVESR 180 VERNLPPIPP FKPTSKDSSF SKLNLMV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	150	154	KKKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00573	DAP	Transfer from AT5G61620	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008676506.1	1e-95	putative MYB DNA-binding domain superfamily protein isoform X1
Swissprot	Q7XC57	1e-42	MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBL	A0A446YHL6	5e-96	A0A446YHL6_TRITD; Uncharacterized protein
STRING	Traes_7BL_C184D0525.1	3e-95	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5858	36	52

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Su CF, et al. A novel MYBS3-dependent pathway confers cold tolerance in rice. Plant Physiol., 2010. 153(1): p. 145-58 [PMID:20130099]