PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00401.1.g00120.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 221aa    MW: 24490.9 Da    PI: 8.9952
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00401.1.g00120.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.23.8e-131456143
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksr 43
                                  rg W++eEde+l++++  +G g+W+ ++++ g  R++k+c++r
  Zmw_sc00401.1.g00120.1.sm.mk 14 RGLWSPEEDEKLIRYISTHGYGCWSEVPEKAGHQRCRKSCRLR 56
                                  788*****************************88*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-16655IPR009057Homeodomain-like
PROSITE profilePS5129416.108965IPR017930Myb domain
SMARTSM007171.2E-51363IPR001005SANT/Myb domain
PfamPF002492.1E-121456IPR001005SANT/Myb domain
SuperFamilySSF466891.45E-131682IPR009057Homeodomain-like
CDDcd001678.31E-101756No hitNo description
Gene3DG3DSA:1.10.10.609.2E-45682IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-1692103IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MGHHSCCNEQ KVKRGLWSPE EDEKLIRYIS THGYGCWSEV PEKAGHQRCR KSCRLRPDIR  60
RGRLSAEEEK LIISLHAIVG NRTEFKSNKN YWYSWIKKKI RKPASTTSSS VSLPCSTVTA  120
ASDTAHGHLQ TLPFSVADQQ LDAIISQGLA LPSSKLAAGQ DSPPTEPLPP PHCPFFMFDT  180
NVSLPSSLSP AAATQLQHPS LTFTTAAMTC RATSCLRWWT A
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822193.13e-93myb-related protein 308
TrEMBLA0A2T7D3G11e-94A0A2T7D3G1_9POAL; Uncharacterized protein
STRINGPavir.Fb00364.1.p3e-87(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60323757