PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00402.1.g00100.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WRKY

Protein Properties

Length: 475aa MW: 50457.3 Da PI: 10.4048

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00402.1.g00100.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	87.9	9e-28	301	359	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt a +Cpv+kk++r+a+d +v++ tY g Hnh+ Zmw_sc00402.1.g00100.1.am.mk 301 NDGCQWRKYGQKVAKGNPCPRAYYRCTGApDCPVRKKLQRCAQDASVLVSTYDGVHNHP 359 8************************999**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.4E-27	288	359	IPR003657	WRKY domain
SuperFamily	SSF118290	3.14E-24	293	360	IPR003657	WRKY domain
PROSITE profile	PS50811	25.373	295	361	IPR003657	WRKY domain
SMART	SM00774	5.0E-32	300	360	IPR003657	WRKY domain
Pfam	PF03106	2.0E-23	301	359	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence Send to blast
MKTEACRSST GKNNDILLSP VLVPVRDKSE PPTYQEPEPT VTRRCRVFDG NEQPSRTTRA 60 RAAGRTKQAC GRTASKGSAG REPVIRSPVT RAVDFIYIYW GRRQAARRLR VQKGEEKRVV 120 SLMEMKTRVL EVMRDAEKVP RIDASEEHFR RVRNEAERRH RIGFPQLGDG PASTLPCRDG 180 TGDERPPGSF LALSLGATTN DPLRASLPAK RGEEASSAVI SLGLGLGLRS SSDGGGDETV 240 IGAKRQRTSD SGNGAGDVPS AVAAGPGRYR EVGRGKNASP PPPTRPGRVS FRMRCSAPTI 300 NDGCQWRKYG QKVAKGNPCP RAYYRCTGAP DCPVRKKLQR CAQDASVLVS TYDGVHNHPL 360 TPYAAAMASA MAAAADSSSS APLVLPSSSS SFSSAPLRAV PVAMLPPQSY YAAATGSGVT 420 VPGAAMSSRN PMAGIVEKAV ADPKFRAAVM AAVASYVGEH CGGKISELLT LAPPC

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence Send to blast

MKTEACRSST GKNNDILLSP VLVPVRDKSE PPTYQEPEPT VTRRCRVFDG NEQPSRTTRA  60
RAAGRTKQAC GRTASKGSAG REPVIRSPVT RAVDFIYIYW GRRQAARRLR VQKGEEKRVV  120
SLMEMKTRVL EVMRDAEKVP RIDASEEHFR RVRNEAERRH RIGFPQLGDG PASTLPCRDG  180
TGDERPPGSF LALSLGATTN DPLRASLPAK RGEEASSAVI SLGLGLGLRS SSDGGGDETV  240
IGAKRQRTSD SGNGAGDVPS AVAAGPGRYR EVGRGKNASP PPPTRPGRVS FRMRCSAPTI  300
NDGCQWRKYG QKVAKGNPCP RAYYRCTGAP DCPVRKKLQR CAQDASVLVS TYDGVHNHPL  360
TPYAAAMASA MAAAADSSSS APLVLPSSSS SFSSAPLRAV PVAMLPPQSY YAAATGSGVT  420
VPGAAMSSRN PMAGIVEKAV ADPKFRAAVM AAVASYVGEH CGGKISELLT LAPPC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-18	300	360	17	76	Probable WRKY transcription factor 4
2lex_A	1e-18	300	360	17	76	Probable WRKY transcription factor 4
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012701689.1	1e-74	probable WRKY transcription factor 31
TrEMBL	A0A1E5VD97	1e-76	A0A1E5VD97_9POAL; Putative WRKY transcription factor 9
STRING	Si002295m	5e-74	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14319	22	26