PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00402.1.g00320.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 317aa MW: 34270.3 Da PI: 9.6845

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00402.1.g00320.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31	5.9e-10	5	34	1	30
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIart 30 ++rWT+eE+ l+ +v+++G+g W+tI r Zmw_sc00402.1.g00320.1.sm.mkhc 5 KQRWTAEEEAALKAGVARHGPGKWRTILRD 34 79*************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.087	1	51	IPR017930	Myb domain
SuperFamily	SSF46689	2.24E-9	2	50	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.5E-9	5	50	IPR009057	Homeodomain-like
Pfam	PF00249	2.5E-6	5	33	IPR001005	SANT/Myb domain
CDD	cd11660	5.23E-13	6	50	No hit	No description
SuperFamily	SSF46785	4.68E-6	169	207	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	1.2E-6	171	207	IPR011991	Winged helix-turn-helix DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MGAPKQRWTA EEEAALKAGV ARHGPGKWRT ILRDPDFGPL LSLRSNVDLK VGPAXXXXSL 60 RSNVDLKVGP AARRGSRGGS AGRFCEFAGV GGLAISELDK WRNLSVTAGG YGSREKARMA 120 LKKGRHVPKV PAESMEVDEY HMDNVHNAFL DVQPLAMVVE PLQLGDSPDK SVVRLDEIIL 180 EAIKNLKKAS GSNKAAIASY IEVNQKYRIA PTSPSLGGKS TKLYSMEEMN RENNVKQLAK 240 PQVDSKLEKM RSMTKEEAAV FAAKAVAEAE VAIAEAEEAA RVAEAAEADA EAAKVFLEAV 300 TVTIRNRNVA SMMLRAC

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818200.1	1e-110	single myb histone 1
Swissprot	B4FT40	3e-95	SMH2_MAIZE; Single myb histone 2
TrEMBL	A0A3L6SQP0	1e-114	A0A3L6SQP0_PANMI; Single myb histone 1-like
STRING	Pavir.Ea02064.1.p	1e-110	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1324	38	110

Publications ? help Back to Top
Soderlund C, et al. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. PLoS Genet., 2009. 5(11): p. e1000740 [PMID:19936069]