PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00403.1.g00190.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 530aa MW: 58026.1 Da PI: 5.9715

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00403.1.g00190.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.7	4.8e-17	283	323	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 W+ eEd +l++a+++ G++ W+ Ia++++ gRt++++k++w+ Zmw_sc00403.1.g00190.1.am.mk 283 IWSDEEDMILIQAHQEVGNK-WAEIAKRLP-GRTENSIKNHWN 323 6*****************.*****.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	19.737	276	330	IPR017930	Myb domain
SuperFamily	SSF46689	9.33E-16	279	331	IPR009057	Homeodomain-like
SMART	SM00717	1.6E-16	280	328	IPR001005	SANT/Myb domain
CDD	cd00167	8.39E-14	284	326	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.5E-19	284	324	IPR009057	Homeodomain-like
Pfam	PF00249	1.2E-15	284	323	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 530 aa Download sequence Send to blast
MDQPQENDGD AAGRSGLYLG VDGFLELPPE CVGKPSGRGT AHGGGEVALP VQHSVQAFPL 60 IVPFGCVGQI TKATQEGSLQ VQQPKSNLTT RKKKSATDRS TLSSPKDKKL TPRDLVKTRG 120 DRRSAANVLN PRKPELSTGE DAPLHRHQRP LFTGTLFLDK WTRQQTLLSS QANDETSLIH 180 VRQLFKQNGF CHPVDHQFEG VGEYASAGSV VSSAAFNDLG HQYYAEREAR NGFGLYKAYE 240 MSSRFVPRKK ASGSSLKKAN VVKGQWTQEE DRSDILMQMQ KDIWSDEEDM ILIQAHQEVG 300 NKWAEIAKRL PGRTENSIKN HWNATKRRQF ARRRSRASSK APKSGTLLQS YIKSLGIGPS 360 KTVETLLAQP PLSPSSSSPA PPGAKPADFN DDGCPELEPD QSNAPNVQGI LGAIHENSCG 420 EAKPCEELLG PICDGFLVDM GDGLFCTPEM AAFQVYSVGD EVDGDFIFNH LDCPVKVDRE 480 EMCVDMAWVD DALGCVVEQG SCQSETMQVI KKEVDLVEMV AASQERTGQE

Sequence ? help Back to Top

Protein Sequence Length: 530 aa Download sequence Send to blast

MDQPQENDGD AAGRSGLYLG VDGFLELPPE CVGKPSGRGT AHGGGEVALP VQHSVQAFPL  60
IVPFGCVGQI TKATQEGSLQ VQQPKSNLTT RKKKSATDRS TLSSPKDKKL TPRDLVKTRG  120
DRRSAANVLN PRKPELSTGE DAPLHRHQRP LFTGTLFLDK WTRQQTLLSS QANDETSLIH  180
VRQLFKQNGF CHPVDHQFEG VGEYASAGSV VSSAAFNDLG HQYYAEREAR NGFGLYKAYE  240
MSSRFVPRKK ASGSSLKKAN VVKGQWTQEE DRSDILMQMQ KDIWSDEEDM ILIQAHQEVG  300
NKWAEIAKRL PGRTENSIKN HWNATKRRQF ARRRSRASSK APKSGTLLQS YIKSLGIGPS  360
KTVETLLAQP PLSPSSSSPA PPGAKPADFN DDGCPELEPD QSNAPNVQGI LGAIHENSCG  420
EAKPCEELLG PICDGFLVDM GDGLFCTPEM AAFQVYSVGD EVDGDFIFNH LDCPVKVDRE  480
EMCVDMAWVD DALGCVVEQG SCQSETMQVI KKEVDLVEMV AASQERTGQE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1idy_A	2e-19	277	329	1	53	MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
1idz_A	2e-19	277	329	1	53	MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025796038.1	1e-108	transcription factor MYB41-like
TrEMBL	A0A1E5V2V3	1e-113	A0A1E5V2V3_9POAL; Transcription factor MYB98
STRING	Pavir.J02497.1.p	1e-110	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2806	37	88