PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00408.1.g00370.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

SRS

Protein Properties

Length: 333aa MW: 33279.8 Da PI: 8.7663

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00408.1.g00370.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	215.4	1.3e-66	107	265	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa......aeaaskrkrel 78 ++sCqdCGn+akkdCah+RCRtCC+srgf+C thvkstWvpaakrrerqqqlaa+ + aa+++ a+aaskr+rel Zmw_sc00408.1.g00370.1.am.mk 107 AGTSCQDCGNNAKKDCAHMRCRTCCRSRGFSCPTHVKSTWVPAAKRRERQQQLAALFRGAANNSasasaaAAAASKRPREL 187 4579*************************************************99998888777777778888999998 PP DUF702 79 ..kskkqsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 + + ++ss+ +++++s+ + ++P+e+s+eavfrcvr++ vd+ ++elaYqtavsigGh+fkGiL+d+G+++ Zmw_sc00408.1.g00370.1.am.mk 188 vrSLGRLPSASSAMVATTTSSGDGSGGRFPPELSVEAVFRCVRIGPVDEPDAELAYQTAVSIGGHTFKGILRDHGPAD 265 5533334444444555555555566777*********************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.3E-63	108	264	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.2E-25	110	152	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.6E-18	215	263	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009938	Biological Process	negative regulation of gibberellic acid mediated signaling pathway
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MAGFSLRGGG GGGGGRAGDR SGDHSIGADS LFLYARGAAA AAADTAGSGG GGGGIGFQLW 60 HPHQQAAAAA APHTSQFFSS GVATGVVLGF SSHDGGGGIG GAGGGRAGTS CQDCGNNAKK 120 DCAHMRCRTC CRSRGFSCPT HVKSTWVPAA KRRERQQQLA ALFRGAANNS ASASAAAAAA 180 SKRPRELVRS LGRLPSASSA MVATTTSSGD GSGGRFPPEL SVEAVFRCVR IGPVDEPDAE 240 LAYQTAVSIG GHTFKGILRD HGPADDAAVG QLPPYSAEYH QLTGAGRHES SPAGSSEAAA 300 TAVTSAAVLM DPYPTPIGAF AAGTQFFPHN PRT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	6	15	RGGGGGGGGR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025813341.1	1e-155	protein SHI RELATED SEQUENCE 1
TrEMBL	A0A2T7DU75	1e-160	A0A2T7DU75_9POAL; Uncharacterized protein
STRING	Pavir.J38504.1.p	1e-161	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1354	35	124