PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00409.1.g00060.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 514aa MW: 54216.6 Da PI: 7.8767

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00409.1.g00060.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.2	3.2e-06	29	51	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F+r nL+ H r H Zmw_sc00409.1.g00060.1.am.mk 29 FVCEVCNRGFPREQNLQLHRRGH 51 89*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	7.13E-7	28	51	No hit	No description
Gene3D	G3DSA:3.30.160.60	9.0E-5	28	51	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.741	29	51	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0029	29	51	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	31	51	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	7.13E-7	100	125	No hit	No description
SMART	SM00355	230	105	125	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 514 aa Download sequence Send to blast
MHLINDDDAD PDAEVIALSP GTLLATNRFV CEVCNRGFPR EQNLQLHRRG HNLPWRLKQK 60 NPKEARRKVY LCPEPTCVHH DPSRALGDLT GIKKHFCRKH GEKKWKCDKC NKLYGVQSDW 120 KAHSKTCGTR EYRCDCGKLF SRYPCLDSPF SIDPANFLAI ITIIFYLFFT ASESTLGIPT 180 GSREDIALPA SARPHASFLK DSFITHRAFC DALARESAQI TPLGTGLYVG SGGRALGVSG 240 GAPQMSAVFG TQAQPSAAAA SQLDHIMASF SSPSMFGSQA SASSSSFFLG GGGGPPPSQQ 300 DFSVDGDYSQ GSQSSHLLHG KTPAGFHGLM QLPEQNQQGR KANGNLLNLG FFSNNSGGAA 360 AGQDARLVIQ DQFNGNTEQR SMTASVGNHL SGNFSSLYNS PGSASASDLP LNSATALLLK 420 AAQMGSTTSS NPNCTSALLR AAGFGGNAQQ GNSAAGEGSA ADETHIHDLI MNSLASGSGG 480 TGLDDGTRDF LGVGRGSMAS IGVHMGALDP AQMK

Sequence ? help Back to Top

Protein Sequence Length: 514 aa Download sequence Send to blast

MHLINDDDAD PDAEVIALSP GTLLATNRFV CEVCNRGFPR EQNLQLHRRG HNLPWRLKQK  60
NPKEARRKVY LCPEPTCVHH DPSRALGDLT GIKKHFCRKH GEKKWKCDKC NKLYGVQSDW  120
KAHSKTCGTR EYRCDCGKLF SRYPCLDSPF SIDPANFLAI ITIIFYLFFT ASESTLGIPT  180
GSREDIALPA SARPHASFLK DSFITHRAFC DALARESAQI TPLGTGLYVG SGGRALGVSG  240
GAPQMSAVFG TQAQPSAAAA SQLDHIMASF SSPSMFGSQA SASSSSFFLG GGGGPPPSQQ  300
DFSVDGDYSQ GSQSSHLLHG KTPAGFHGLM QLPEQNQQGR KANGNLLNLG FFSNNSGGAA  360
AGQDARLVIQ DQFNGNTEQR SMTASVGNHL SGNFSSLYNS PGSASASDLP LNSATALLLK  420
AAQMGSTTSS NPNCTSALLR AAGFGGNAQQ GNSAAGEGSA ADETHIHDLI MNSLASGSGG  480
TGLDDGTRDF LGVGRGSMAS IGVHMGALDP AQMK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	6e-20	101	142	3	44	Zinc finger protein JACKDAW
5b3h_F	6e-20	101	142	3	44	Zinc finger protein JACKDAW
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004957598.1	1e-159	protein indeterminate-domain 5, chloroplastic
Refseq	XP_004957599.1	1e-159	protein indeterminate-domain 5, chloroplastic
Refseq	XP_004957600.1	1e-159	protein indeterminate-domain 5, chloroplastic
TrEMBL	K3ZSG0	1e-157	K3ZSG0_SETIT; Uncharacterized protein
STRING	Si029540m	1e-158	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP24679	4	6